PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1199aa MW: 132136 Da PI: 5.2767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	1089	1114	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.10 1089 FQCEidFCDMTFESRAELRAHERNiC 1114 89********************9877 PP
2	zf-C2H2	10.8	0.0015	1142	1166	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.10 1142 FKCPwdGCGMTFKWLWAQTEHIRVH 1166 89*********************99 PP
3	zf-C2H2	14.1	0.00014	1172	1198	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.10 1172 YECSvpDCGQTFRYVSDYSRHRRKfnH 1198 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1199 aa Download sequence
MFVHAASLAV LGEKTTLMSP EVIVAAGLPC CRLVQHPGEF VVTFPRAYHV GFSHGFNCGE 60 AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV SFISRTPREL LYGIRTSRLR 120 DRRKEERELL VKREFLQDMI SENELLCAFL KKKLIENAVL WEPDLLPSST ALHSCSSGPK 180 APLKVDDVHS IESVPKENSS SDDIASRAGI QPKCMSMDSK SSDAMSAAEA QKLDTDTDDD 240 GDLPFDLSID SGSLTCVACG ILGFPFMAIL QPSKKALEDM SLVDIERFKL NCEKENHSNA 300 IPCSPDDSIS GHPVIAKRPS SPVAQSNFSH QNAESDKDGV GLDGPLLPHN NSAHSCNSEN 360 TLNPGINTET TETKIPSARF GIEFSKQTGR GDIDAQATES CGNTVDWNIT SAFVRPRIFC 420 LQHALEIEEL LEGKGGAHAL IICHADYTKL KALAISIAEE IEFQFDCKDV PLANASKSDL 480 HLINISIDDE GYKEDERDWT TQMGLNMKYF AKLRKETPGC QEQPPLSFWK RLDISDKPSP 540 ISVVPNLKWL CRRARTPYRV VGYAASRNAT VGPDVVSPAV TKAEMGTSGN AYENAKEQRT 600 GEQDAPLEPS RLQEADDVAD MHTCSEDIDQ DMHCLIGSKR QRTAEQNAPL QPSRLQEADD 660 VVDMHMCSVD NDQDMHRLIG IPVAAAEYPM THQVCEGTVS VSTCELDDLV SASTSDDPIC 720 SAHSQDSPGV SDDFTTEQQC VQSDELTSSV AMSAQQFLVD GSMTAEDSSN HENLGSYNVT 780 SECKDKQLQV QQEQENIELC NNAGRNLAAA VQVNSGHFGD KAVNLKSAIP TESQHEYPKR 840 DAIVLEGMQA ALTTVVSGEN RNSVNTELDS LGILLGALAE ESILADVPGK DEVDDASLTL 900 MTLASIDQSA GDVAHNEVIE TSSSSVGASI SCKGRTLSNL ASDGSLRIQN AEIQNKQENA 960 EEVGAWNCQG LKNSRGILDS SANSLSDTGK SSGTPKAYQP DILSRSIGSS KRRSIICYVR 1020 RKRKQKRKRE SELSTSNSQS FGSFARAPCE RLRPRRKPAV IEEPAEQIET AKPSAAATKG 1080 KRSKVVELFQ CEIDFCDMTF ESRAELRAHE RNICTDESCG KRFQSHKYLK RHQCVHRDER 1140 PFKCPWDGCG MTFKWLWAQT EHIRVHTGER PYECSVPDCG QTFRYVSDYS RHRRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1199 aa Download sequence

MFVHAASLAV LGEKTTLMSP EVIVAAGLPC CRLVQHPGEF VVTFPRAYHV GFSHGFNCGE  60
AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV SFISRTPREL LYGIRTSRLR  120
DRRKEERELL VKREFLQDMI SENELLCAFL KKKLIENAVL WEPDLLPSST ALHSCSSGPK  180
APLKVDDVHS IESVPKENSS SDDIASRAGI QPKCMSMDSK SSDAMSAAEA QKLDTDTDDD  240
GDLPFDLSID SGSLTCVACG ILGFPFMAIL QPSKKALEDM SLVDIERFKL NCEKENHSNA  300
IPCSPDDSIS GHPVIAKRPS SPVAQSNFSH QNAESDKDGV GLDGPLLPHN NSAHSCNSEN  360
TLNPGINTET TETKIPSARF GIEFSKQTGR GDIDAQATES CGNTVDWNIT SAFVRPRIFC  420
LQHALEIEEL LEGKGGAHAL IICHADYTKL KALAISIAEE IEFQFDCKDV PLANASKSDL  480
HLINISIDDE GYKEDERDWT TQMGLNMKYF AKLRKETPGC QEQPPLSFWK RLDISDKPSP  540
ISVVPNLKWL CRRARTPYRV VGYAASRNAT VGPDVVSPAV TKAEMGTSGN AYENAKEQRT  600
GEQDAPLEPS RLQEADDVAD MHTCSEDIDQ DMHCLIGSKR QRTAEQNAPL QPSRLQEADD  660
VVDMHMCSVD NDQDMHRLIG IPVAAAEYPM THQVCEGTVS VSTCELDDLV SASTSDDPIC  720
SAHSQDSPGV SDDFTTEQQC VQSDELTSSV AMSAQQFLVD GSMTAEDSSN HENLGSYNVT  780
SECKDKQLQV QQEQENIELC NNAGRNLAAA VQVNSGHFGD KAVNLKSAIP TESQHEYPKR  840
DAIVLEGMQA ALTTVVSGEN RNSVNTELDS LGILLGALAE ESILADVPGK DEVDDASLTL  900
MTLASIDQSA GDVAHNEVIE TSSSSVGASI SCKGRTLSNL ASDGSLRIQN AEIQNKQENA  960
EEVGAWNCQG LKNSRGILDS SANSLSDTGK SSGTPKAYQP DILSRSIGSS KRRSIICYVR  1020
RKRKQKRKRE SELSTSNSQS FGSFARAPCE RLRPRRKPAV IEEPAEQIET AKPSAAATKG  1080
KRSKVVELFQ CEIDFCDMTF ESRAELRAHE RNICTDESCG KRFQSHKYLK RHQCVHRDER  1140
PFKCPWDGCG MTFKWLWAQT EHIRVHTGER PYECSVPDCG QTFRYVSDYS RHRRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1011	1027	KRRSIICYVRRKRKQKR
2	1011	1029	KRRSIICYVRRKRKQKRKR
3	1019	1026	VRRKRKQK
4	1021	1030	RKRKQKRKRE
5	1023	1032	RKRKQKRKRE
6	1053	1057	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	2e-59	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.10