PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1061aa MW: 116421 Da PI: 4.8883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	951	976	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.1 951 FQCEidFCDMTFESRAELRAHERNiC 976 89********************9877 PP
2	zf-C2H2	11	0.0013	1004	1028	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.1 1004 FKCPwdGCGMTFKWLWAQTEHIRVH 1028 89*********************99 PP
3	zf-C2H2	14.3	0.00012	1034	1060	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.1 1034 YECSvpDCGQTFRYVSDYSRHRRKfnH 1060 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence
MISENELLCA FLKKKLIENA VLWEPDLLPS STALHSCSSG PKAPLKVDDV HSIESVPKEN 60 SSSDDIASRA GIQPKCMSMD SKSSDAMSAA EAQKLDTDTD DDGDLPFDLS IDSGSLTCVA 120 CGILGFPFMA ILQPSKKALE DMSLVDIERF KLNCEKENHS NAIPCSPDDS ISGHPVIAKR 180 PSSPVAQSNF SHQNAESDKD GVGLDGPLLP HNNSAHSCNS ENTLNPGINT ETTETKIPSA 240 RFGIEFSKQT GRGDIDAQAT ESCGNTVDWN ITSAFVRPRI FCLQHALEIE ELLEGKGGAH 300 ALIICHADYT KLKALAISIA EEIEFQFDCK DVPLANASKS DLHLINISID DEGYKEDERD 360 WTTQMGLNMK YFAKLRKETP GCQEQPPLSF WKRLDISDKP SPISVVPNLK WLCRRARTPY 420 RVVGYAASRN ATVGPDVVSP AVTKAEMGTS GNAYENAKEQ RTGEQDAPLE PSRLQEADDV 480 ADMHTCSEDI DQDMHCLIGS KRQRTAEQNA PLQPSRLQEA DDVVDMHMCS VDNDQDMHRL 540 IGIPVAAAEY PMTHQVCEGT VSVSTCELDD LVSASTSDDP ICSAHSQDSP GVSDDFTTEQ 600 QCVQSDELTS SVAMSAQQFL VDGSMTAEDS SNHENLGSYN VTSECKDKQL QVQQEQENIE 660 LCNNAGRNLA AAVQVNSGHF GDKAVNLKSA IPTESQHEYP KRDAIVLEGM QAALTTVVSG 720 ENRNSVNTEL DSLGILLGAL AEESILADVP GKDEVDDASL TLMTLASIDQ SAGDVAHNEV 780 IETSSSSVGA SISCKGRTLS NLASDGSLRI QNAEIQNKQE NAEEVGAWNC QGLKNSRGIL 840 DSSANSLSDT GKSSGTPKAY QPDILSRSIG SSKRRSIICY VRRKRKQKRK RESELSTSNS 900 QSFGSFARAP CERLRPRRKP AVIEEPAEQI ETAKPSAAAT KGKRSKVVEL FQCEIDFCDM 960 TFESRAELRA HERNICTDES CGKRFQSHKY LKRHQCVHRD ERPFKCPWDG CGMTFKWLWA 1020 QTEHIRVHTG ERPYECSVPD CGQTFRYVSD YSRHRRKFNH Y

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence

MISENELLCA FLKKKLIENA VLWEPDLLPS STALHSCSSG PKAPLKVDDV HSIESVPKEN  60
SSSDDIASRA GIQPKCMSMD SKSSDAMSAA EAQKLDTDTD DDGDLPFDLS IDSGSLTCVA  120
CGILGFPFMA ILQPSKKALE DMSLVDIERF KLNCEKENHS NAIPCSPDDS ISGHPVIAKR  180
PSSPVAQSNF SHQNAESDKD GVGLDGPLLP HNNSAHSCNS ENTLNPGINT ETTETKIPSA  240
RFGIEFSKQT GRGDIDAQAT ESCGNTVDWN ITSAFVRPRI FCLQHALEIE ELLEGKGGAH  300
ALIICHADYT KLKALAISIA EEIEFQFDCK DVPLANASKS DLHLINISID DEGYKEDERD  360
WTTQMGLNMK YFAKLRKETP GCQEQPPLSF WKRLDISDKP SPISVVPNLK WLCRRARTPY  420
RVVGYAASRN ATVGPDVVSP AVTKAEMGTS GNAYENAKEQ RTGEQDAPLE PSRLQEADDV  480
ADMHTCSEDI DQDMHCLIGS KRQRTAEQNA PLQPSRLQEA DDVVDMHMCS VDNDQDMHRL  540
IGIPVAAAEY PMTHQVCEGT VSVSTCELDD LVSASTSDDP ICSAHSQDSP GVSDDFTTEQ  600
QCVQSDELTS SVAMSAQQFL VDGSMTAEDS SNHENLGSYN VTSECKDKQL QVQQEQENIE  660
LCNNAGRNLA AAVQVNSGHF GDKAVNLKSA IPTESQHEYP KRDAIVLEGM QAALTTVVSG  720
ENRNSVNTEL DSLGILLGAL AEESILADVP GKDEVDDASL TLMTLASIDQ SAGDVAHNEV  780
IETSSSSVGA SISCKGRTLS NLASDGSLRI QNAEIQNKQE NAEEVGAWNC QGLKNSRGIL  840
DSSANSLSDT GKSSGTPKAY QPDILSRSIG SSKRRSIICY VRRKRKQKRK RESELSTSNS  900
QSFGSFARAP CERLRPRRKP AVIEEPAEQI ETAKPSAAAT KGKRSKVVEL FQCEIDFCDM  960
TFESRAELRA HERNICTDES CGKRFQSHKY LKRHQCVHRD ERPFKCPWDG CGMTFKWLWA  1020
QTEHIRVHTG ERPYECSVPD CGQTFRYVSD YSRHRRKFNH Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	873	889	KRRSIICYVRRKRKQKR
2	873	891	KRRSIICYVRRKRKQKRKR
3	881	888	VRRKRKQK
4	883	892	RKRKQKRKRE
5	885	894	RKRKQKRKRE
6	915	919	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-50	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.1