PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG047340.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 610aa MW: 65259 Da PI: 5.1527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG047340.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	96	117	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H TRIDC4AG047340.2 96 KCAKCPREFCSSVALRRHTRVH 117 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
DSSFLLSPVP SISVFPSPIS HARPPRRRPA GKMAASGSGS GSGQIQPLKI PDAVVALAQA 60 AAKANNSSNS AAAADATDKY LPGWPLFSPP KMQLTKCAKC PREFCSSVAL RRHTRVHRRA 120 LKIDKDFPKN RDHLAAFWDK LTVDQAQAIL SLEGVAIEET SALFILTSLS SWMCKPGYAS 180 LPLPYARAGN ELLDLIQTAA SRLPISSNEL FIMLDEASEN TFLCTNAADA AFVQKFLFDG 240 EVEKVATELK NVVACTSYIL EQKLVEAWSA DKAAEALRCQ KLLVEEEDAA QKRQAEIMER 300 KRMKKLRQKE QRLKDLKDEG TMVQLPEVVD GATSSPGIQS LEAVSGPGLH EQEDPQHLQL 360 SAPVPSDDNG CNGEDANCGS GQEIDTAAVF REQAMATSNL DRAENLPPNS SVSGSSATAS 420 KHPSSSSVRH SRHREPNVGA ATNKSKTWAW KVRTGVEERC PKGEPDVDAN QETAPLNTDK 480 NSQVLIGSIS VAIEDGGGCS QDSKDNHPAP PESDSNTLND PVAKVMQPTS HDENGCEDAN 540 GGTITPAAED HSPSSIMTDE SGSVCGNVES AESVGLQRGT MMSSGQEAAA FLSQRWKEAV 600 AGDHVKLVLC

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

DSSFLLSPVP SISVFPSPIS HARPPRRRPA GKMAASGSGS GSGQIQPLKI PDAVVALAQA  60
AAKANNSSNS AAAADATDKY LPGWPLFSPP KMQLTKCAKC PREFCSSVAL RRHTRVHRRA  120
LKIDKDFPKN RDHLAAFWDK LTVDQAQAIL SLEGVAIEET SALFILTSLS SWMCKPGYAS  180
LPLPYARAGN ELLDLIQTAA SRLPISSNEL FIMLDEASEN TFLCTNAADA AFVQKFLFDG  240
EVEKVATELK NVVACTSYIL EQKLVEAWSA DKAAEALRCQ KLLVEEEDAA QKRQAEIMER  300
KRMKKLRQKE QRLKDLKDEG TMVQLPEVVD GATSSPGIQS LEAVSGPGLH EQEDPQHLQL  360
SAPVPSDDNG CNGEDANCGS GQEIDTAAVF REQAMATSNL DRAENLPPNS SVSGSSATAS  420
KHPSSSSVRH SRHREPNVGA ATNKSKTWAW KVRTGVEERC PKGEPDVDAN QETAPLNTDK  480
NSQVLIGSIS VAIEDGGGCS QDSKDNHPAP PESDSNTLND PVAKVMQPTS HDENGCEDAN  540
GGTITPAAED HSPSSIMTDE SGSVCGNVES AESVGLQRGT MMSSGQEAAA FLSQRWKEAV  600
AGDHVKLVLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	306	ERKRMKKL
2	304	314	KKLRQKEQRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	7e-86	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG047340.2