PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC4AG042930.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 616aa MW: 66480.6 Da PI: 8.0063

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG042930.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.9e-07	168	188	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TRIDC4AG042930.1 168 PCPDFRK-GVCRRGDMCEYAHG 188 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
AVEAVRLLLV AGADADAADA SGCRPADVIS VPPKMIDAKI ALQDLLGLPK SGHGVLRVVT 60 RATNLTSSPV SSPTAEDARS PSAAVMMMSK FPDLPRVATS EKKEYPVDPS LPDIKNSIYA 120 SDEFRMYSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGVCRRG 180 DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC NRRVCFFAHT TDELRPLYVS TGSAVPSPRA 240 SATAAMEMAA AMGLMPGSPS SVSVVMSPFT PPRSPSGNGM PPSLGWQQPN VPTLHLPGSS 300 LQSSRLRSSL NARDMPVDDY SLLQDIDSQL INDLCYSRLG SSAGGNHSSR TKSLNPSNLD 360 DLFSAEMVSS PRYNNADQGA MFSPSQKAAI LNQFQQQQQL LSPINTGFSP KAVDNQQMHS 420 RSSLLQASLG ISSPGRMSPR CVESGSPMNS HLAAALAQRE KQQQQQHQQH QQTMRSLSSR 480 DLGPSAARAS AAVGSPLSSS WSKWGSPSGA PDWGVNGEEL GKLRRSSSFE LRSGGDDPDL 540 SWVHTLVKES PPEKQVTTAE SINNSVRPSP QMHPGVSNGE GPSVSTQLNR HDQAAVIGAL 600 LEQMQLDEQI GSLAAT

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

AVEAVRLLLV AGADADAADA SGCRPADVIS VPPKMIDAKI ALQDLLGLPK SGHGVLRVVT  60
RATNLTSSPV SSPTAEDARS PSAAVMMMSK FPDLPRVATS EKKEYPVDPS LPDIKNSIYA  120
SDEFRMYSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGVCRRG  180
DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC NRRVCFFAHT TDELRPLYVS TGSAVPSPRA  240
SATAAMEMAA AMGLMPGSPS SVSVVMSPFT PPRSPSGNGM PPSLGWQQPN VPTLHLPGSS  300
LQSSRLRSSL NARDMPVDDY SLLQDIDSQL INDLCYSRLG SSAGGNHSSR TKSLNPSNLD  360
DLFSAEMVSS PRYNNADQGA MFSPSQKAAI LNQFQQQQQL LSPINTGFSP KAVDNQQMHS  420
RSSLLQASLG ISSPGRMSPR CVESGSPMNS HLAAALAQRE KQQQQQHQQH QQTMRSLSSR  480
DLGPSAARAS AAVGSPLSSS WSKWGSPSGA PDWGVNGEEL GKLRRSSSFE LRSGGDDPDL  540
SWVHTLVKES PPEKQVTTAE SINNSVRPSP QMHPGVSNGE GPSVSTQLNR HDQAAVIGAL  600
LEQMQLDEQI GSLAAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-163	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG042930.1