PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC4AG041890.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 415aa MW: 45270.7 Da PI: 6.0696

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG041890.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	7.8e-08	18	61	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v TRIDC4AG041890.2 18 ARACDGCMRRRARWHCAADDAYLCQACDASVHSAnplarrhHRV 61 578*****************************668888886655 PP
2	CCT	66.4	8.2e-23	345	388	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ TRIDC4AG041890.2 345 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 388 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
LVSDEMASAG AAIGARAARA CDGCMRRRAR WHCAADDAYL CQACDASVHS ANPLARRHHR 60 VRLPSSSSPA ATSSLQHADP DEPAWLHGLK RRPRTPRSKP GMVGKHGAPA AAKAAAASAV 120 PDLEAEDSGS GIVGDNDEGH GVEVDDEDLL YRVPVFDPML AELYNPVPVD EFREPLEQKP 180 SVCCFSSLAN QPSSEYASGV AEAADGFSGF DVVPDMELAS FAADMESLLM GGVEEGFDDL 240 RFLDEEKPQL NLDFDMADFD DQSTAAPAPE QELGDRKRKR SDSGMILKLD YERVIDSWAH 300 DGGSPWFYGE RPHIDPSDDS WLDLPAGSRG FGLGAAVTAV TGGEREARVS RYREKRRTRL 360 FAKKIRYEVR KLNAEKRPRM KGRFVKRTAL PPLPPRPPMV LAGHGHGGAH GRFRF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

LVSDEMASAG AAIGARAARA CDGCMRRRAR WHCAADDAYL CQACDASVHS ANPLARRHHR  60
VRLPSSSSPA ATSSLQHADP DEPAWLHGLK RRPRTPRSKP GMVGKHGAPA AAKAAAASAV  120
PDLEAEDSGS GIVGDNDEGH GVEVDDEDLL YRVPVFDPML AELYNPVPVD EFREPLEQKP  180
SVCCFSSLAN QPSSEYASGV AEAADGFSGF DVVPDMELAS FAADMESLLM GGVEEGFDDL  240
RFLDEEKPQL NLDFDMADFD DQSTAAPAPE QELGDRKRKR SDSGMILKLD YERVIDSWAH  300
DGGSPWFYGE RPHIDPSDDS WLDLPAGSRG FGLGAAVTAV TGGEREARVS RYREKRRTRL  360
FAKKIRYEVR KLNAEKRPRM KGRFVKRTAL PPLPPRPPMV LAGHGHGGAH GRFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	LKRRPRT
2	356	372	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-50	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG041890.2