PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC4AG023960.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 246aa MW: 27082.3 Da PI: 5.2298 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 54.1 | 3.4e-17 | 3 | 77 | 24 | 98 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+s+a elf+ +l s+ + ++ +tl+ ++++v+r fdfl++iv + TRIDC4AG023960.5 3 ARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDHSYKITLQSGAKTLNSFHLKQCVKRYSSFDFLTEIVNK 77 7**********************************************************************9976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence |
CPARIKKIMQ ADEDVGKIAL AVPVLVSRAL ELFLQDLIDH SYKITLQSGA KTLNSFHLKQ 60 CVKRYSSFDF LTEIVNKVPD LGGGESCGDE RGLPRRRKFS NGSDPENEEP RSSKMPIRSL 120 NTSPRGRGRG RGRGRGRPPT KRKEIGYVQF EDESSMFAEQ SEPLPGDEIV PETNRGNESI 180 PQSSHPLVEA PSAMTPAVIS KVEEASTNHQ PDWPMPDAIV GIGVGPSSFG HLTVQVDEVE 240 DYDNED |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 94 | 98 | PRRRK |
2 | 125 | 134 | RGRGRGRGRG |
3 | 125 | 135 | RGRGRGRGRGR |
4 | 127 | 136 | RGRGRGRGRG |
5 | 127 | 137 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-42 | NF-YC family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC4AG023960.5 |