PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC4AG008140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27206.7 Da PI: 7.9657 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.7e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss TRIDC4AG008140.1 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 99.9 | 3.7e-33 | 85 | 171 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++e +qe+ kLk ++e Lq++qR++lGedL++Ls+keL q+e+q++ slk+iRskKn++ll+q+ el+ ke+elq+enk+Lrkkl+ TRIDC4AG008140.1 85 ENEINYQEYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIENQIDASLKHIRSKKNQVLLDQLFELKSKEQELQDENKDLRKKLQ 171 567789*******************************************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence |
MGRGKVEMRR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS 60 SCMYKTLERY RTCNSNSQEA APPLENEINY QEYLKLKTRV EFLQSSQRNI LGEDLGPLSM 120 KELDQIENQI DASLKHIRSK KNQVLLDQLF ELKSKEQELQ DENKDLRKKL QDTTSSCGEN 180 AVHMSWQDGG QSSSRVLQHP EHDTSMQIGY PQAYMDQLNS RDHVASERPG GGSSAGWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02310.1 | 4e-75 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC4AG008140.1 |