PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG006600.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 135aa MW: 14669.5 Da PI: 6.2498 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.8 | 7.7e-10 | 54 | 97 | 7 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r tf R g+ A+EL vLC+aev +++f s g+ +y+ TRIDC4AG006600.3 54 ASRWATFGERNGGLVREAQELVVLCEAEVDILVFDSAGRQLDYC 97 56889*******************************99988887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence |
APTPSSTSGP ADKEARQQRR QEVGGEGVAG EKRYQITSTN KHLIIGRGMV DGDASRWATF 60 GERNGGLVRE AQELVVLCEA EVDILVFDSA GRQLDYCSPH TRSVRSVVDL LVPISIHSSC 120 TLTLITDFLS RPFAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 9e-13 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG006600.3 |