PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG086490.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 897aa MW: 100605 Da PI: 7.899

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG086490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	802	824	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F + +L+ H ++H TRIDC3BG086490.1 802 YVCEICSKGFQSYQQLQLHRQSH 824 9*******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
EEPFTQISRR KNSLVLGGEV SMGKKRRQDP GRDDSSSSHA KRSCHCQNGE KSRPNDGMPP 60 REGLADIIRA VIELKDVMHV KLSTEERFKR KFKMLKEKRK KDKNNHEEDL RVLKEDLTKL 120 KKNQEELEIQ IQEMRKEECA EVNHYKASPS QRSQLSQSTR FRLVIENSVS RTIYKKGTIE 180 TEDGGGHIKV VMYDGGNPIA SNHRLASVRV EIVVIEGGFD EKRDLWSKEE FEESIMKPRR 240 TTTLTSLVKN GTFNLIAGSC DHEGAIIMDN SQQREVKLGV RITVPTETRV LEGVSNPFKV 300 QEGKTKKPAP NKTGKNPSPP VPTRNLVQPT STHATQDGKD RGKHSEFPTD GTAEDNQLSY 360 PPATVRLMVE GNGQALNGNS QQSSQQIPTP ILWQPTSTHP LQHDQGRSPP PPTKPNPLQV 420 AGYYPPFPAC RQDQCTSLPN ASSQVAFPNL SGYGLLDGQW NPIPGGEVFI EDLNHSNVQL 480 PVEEYYVDAS FTCNQVLLQW DTTHVEHKEH WNFLDQFMPL YSTQSRFYRQ SFPSTSLMDK 540 AHKLLASISS GDSVLKMITS VTSQATQTPQ RRGVLVWPIE PYDSVHGPLV KKKRNTKYQL 600 RFVNKVCDDY YTRENIKSED GNLLKVALYD ENNRVVTSGP LSSVSVEVVL LHGDFSAEGH 660 EYWTSEEFSA CLVHPQSVMS IAPALGGHRV LALTCGEADL DNINFRTSSF HARSGKFVMG 720 IEIRNVREES VQEGITNAFL VRVRQGEVTG TGEEMAEPPF GLTLQTATTS DATKRKPWPD 780 RILDQDPEVV SLSLQTLLLD MYVCEICSKG FQSYQQLQLH RQSHNLPWKL KAGKAARKRV 840 FVCPEPSCLH HDPSHALGGL VAIKKHFRRE HSDTATMPET AAPGLSPPTP AQGFEFW

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

EEPFTQISRR KNSLVLGGEV SMGKKRRQDP GRDDSSSSHA KRSCHCQNGE KSRPNDGMPP  60
REGLADIIRA VIELKDVMHV KLSTEERFKR KFKMLKEKRK KDKNNHEEDL RVLKEDLTKL  120
KKNQEELEIQ IQEMRKEECA EVNHYKASPS QRSQLSQSTR FRLVIENSVS RTIYKKGTIE  180
TEDGGGHIKV VMYDGGNPIA SNHRLASVRV EIVVIEGGFD EKRDLWSKEE FEESIMKPRR  240
TTTLTSLVKN GTFNLIAGSC DHEGAIIMDN SQQREVKLGV RITVPTETRV LEGVSNPFKV  300
QEGKTKKPAP NKTGKNPSPP VPTRNLVQPT STHATQDGKD RGKHSEFPTD GTAEDNQLSY  360
PPATVRLMVE GNGQALNGNS QQSSQQIPTP ILWQPTSTHP LQHDQGRSPP PPTKPNPLQV  420
AGYYPPFPAC RQDQCTSLPN ASSQVAFPNL SGYGLLDGQW NPIPGGEVFI EDLNHSNVQL  480
PVEEYYVDAS FTCNQVLLQW DTTHVEHKEH WNFLDQFMPL YSTQSRFYRQ SFPSTSLMDK  540
AHKLLASISS GDSVLKMITS VTSQATQTPQ RRGVLVWPIE PYDSVHGPLV KKKRNTKYQL  600
RFVNKVCDDY YTRENIKSED GNLLKVALYD ENNRVVTSGP LSSVSVEVVL LHGDFSAEGH  660
EYWTSEEFSA CLVHPQSVMS IAPALGGHRV LALTCGEADL DNINFRTSSF HARSGKFVMG  720
IEIRNVREES VQEGITNAFL VRVRQGEVTG TGEEMAEPPF GLTLQTATTS DATKRKPWPD  780
RILDQDPEVV SLSLQTLLLD MYVCEICSKG FQSYQQLQLH RQSHNLPWKL KAGKAARKRV  840
FVCPEPSCLH HDPSHALGGL VAIKKHFRRE HSDTATMPET AAPGLSPPTP AQGFEFW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	27	RRKNSLVLGGEVSMGKKRR
2	89	101	KRKFKMLKEKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25250.1	2e-34	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG086490.1