PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC3BG067780.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 361aa MW: 40230.6 Da PI: 8.9224

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG067780.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	25	51	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.8 25 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 51 5789*********************97 PP
2	zf-CCCH	30.9	4.5e-10	77	97	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ TRIDC3BG067780.8 77 QYYLKTGTCKFGPTCKFHHPR 97 59*****************96 PP
3	zf-CCCH	38.5	1.9e-12	119	143	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.8 119 ERECAYYLKTGQCKYGNTCKFNHPE 143 799********************96 PP
4	zf-CCCH	34.9	2.6e-11	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.8 280 DQPECIYYIKTGDCKFGAVCKFHHPR 305 689*********************96 PP
5	zf-CCCH	42	1.6e-13	325	351	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.8 325 PGEELCKFYSRYGICKFGVNCKFDHPM 351 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
AEGMWQQMAM SSGATMQSGP YPVRPGEPDC TYYLRTGLCR FGMSCRFNHP QDRNTAIASA 60 RMKGEYPERV GQPECQQYYL KTGTCKFGPT CKFHHPREKA GIAGMVQLNT LGYPLRPNER 120 ECAYYLKTGQ CKYGNTCKFN HPEIFSAVAS SRGSPIYPPV HNSGSTGPHS YTGTMASWTY 180 PRGSFIPSPR WQSPSNYTPM IVPQGLVQVP NWNSYPGQMV PVSSPESRLQ SPGAQQYYGT 240 SRQGEASAGN QGMQSPYRSS SFPAPQYALQ RENVFPERPD QPECIYYIKT GDCKFGAVCK 300 FHHPRVRSQP PPDCILSPMG LPLRPGEELC KFYSRYGICK FGVNCKFDHP MAAPMGVYAY 360 G

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

AEGMWQQMAM SSGATMQSGP YPVRPGEPDC TYYLRTGLCR FGMSCRFNHP QDRNTAIASA  60
RMKGEYPERV GQPECQQYYL KTGTCKFGPT CKFHHPREKA GIAGMVQLNT LGYPLRPNER  120
ECAYYLKTGQ CKYGNTCKFN HPEIFSAVAS SRGSPIYPPV HNSGSTGPHS YTGTMASWTY  180
PRGSFIPSPR WQSPSNYTPM IVPQGLVQVP NWNSYPGQMV PVSSPESRLQ SPGAQQYYGT  240
SRQGEASAGN QGMQSPYRSS SFPAPQYALQ RENVFPERPD QPECIYYIKT GDCKFGAVCK  300
FHHPRVRSQP PPDCILSPMG LPLRPGEELC KFYSRYGICK FGVNCKFDHP MAAPMGVYAY  360
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-142	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG067780.8