PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG045780.16

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 619aa MW: 67343.8 Da PI: 4.3627

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG045780.16	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.3e-09	378	417	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e L ++lgLt q++ WF R TRIDC3BG045780.16 378 QKLKAYFEKEPYPSRPAKESLGQELGLTFHQITRWFSSTR 417 68**********************************8776 PP
2	PHD	42.6	1.4e-14	27	82	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3BG045780.16 27 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 82 7****65555****77*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MDSLLLEGKL DESLFDSEGE ISSEDIFCAI CASKHVTLKN DIILCDGVCD RGFHQKCLNP 60 PLLAEDIPQG DEGWLCPACD CKLDCIDLLN ELQGSTLAIH DSWEKVFPES TSNGLNQIGA 120 SDLPSDDSEE DYDPTLAEGD TVDEDKSSAE DGDEGSDSDD LDFITSSDES EPSKKKKSES 180 KNKNTVNDLA LPSDDSEDDD FDPEGPNSSE DQKTKTNSDE SDFTSDSDDF CAEISKSSGK 240 DKVSAPSFSD QTNGVDIMEA ELEQDSVLPA SNRRQVGTLD YKKLYDEAYG KETTDSSDEK 300 EWSGHSPNGN PEDSDTDSFA GPLKPAKTRR ARGGRQNNER TAQSERHSGS VSEQHPEVLS 360 NGTSSTARKK GYGPIVNQKL KAYFEKEPYP SRPAKESLGQ ELGLTFHQIT RWFSSTRHYS 420 RVTATKKGKR SENYTAENND GIAADSIQQR EPNGSVLGKP NVDRNGIISE ERMAQKNLDE 480 GEKEDTPFRQ RISCEQTLDG TPANKHNTAN SREVDPPIGA PGGNQQSDTS RNAEDTPLGQ 540 DIGCEQTVAA INQNCTIGSS NVGSPKGVPG GNKRLNNSPS VGSPRRGSAE KNIPGLEHVD 600 EARRKAILRE LRKMKAAGK

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MDSLLLEGKL DESLFDSEGE ISSEDIFCAI CASKHVTLKN DIILCDGVCD RGFHQKCLNP  60
PLLAEDIPQG DEGWLCPACD CKLDCIDLLN ELQGSTLAIH DSWEKVFPES TSNGLNQIGA  120
SDLPSDDSEE DYDPTLAEGD TVDEDKSSAE DGDEGSDSDD LDFITSSDES EPSKKKKSES  180
KNKNTVNDLA LPSDDSEDDD FDPEGPNSSE DQKTKTNSDE SDFTSDSDDF CAEISKSSGK  240
DKVSAPSFSD QTNGVDIMEA ELEQDSVLPA SNRRQVGTLD YKKLYDEAYG KETTDSSDEK  300
EWSGHSPNGN PEDSDTDSFA GPLKPAKTRR ARGGRQNNER TAQSERHSGS VSEQHPEVLS  360
NGTSSTARKK GYGPIVNQKL KAYFEKEPYP SRPAKESLGQ ELGLTFHQIT RWFSSTRHYS  420
RVTATKKGKR SENYTAENND GIAADSIQQR EPNGSVLGKP NVDRNGIISE ERMAQKNLDE  480
GEKEDTPFRQ RISCEQTLDG TPANKHNTAN SREVDPPIGA PGGNQQSDTS RNAEDTPLGQ  540
DIGCEQTVAA INQNCTIGSS NVGSPKGVPG GNKRLNNSPS VGSPRRGSAE KNIPGLEHVD  600
EARRKAILRE LRKMKAAGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-47	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG045780.16