PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG044000.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 318aa    MW: 33700.7 Da    PI: 9.6548
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG044000.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-1165113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  TRIDC3BG044000.4  65 SRFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 113
                       689***9788.8*********......44**********99*************98 PP
2B397.86.9e-31179272187
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k+ tpsdv+k++rlv+pk++ae+h        g  + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++
  TRIDC3BG044000.4 179 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaG-GESKGLLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLGAGDVVGFYRS 270
                       89*******************************53.456888*************************************************66 PP

                       SS CS
                B3  86 gr 87 
                         
  TRIDC3BG044000.4 271 AA 272
                       44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
DDTSSGGAST DKLKALAAAA AAAAGPLERM GSGASAVLDA AEPGSEADSG GAGAGRAAAG  60
KLPSSRFKGV VPQPNGRWGA QIYERHQRVW LGTFAGEADA ARAYDVAAQR FRGRDAVTNF  120
RPLADADPDA AAELRFLAAR SKAEVVDMLR KHTYFDELAQ SKRGHASTPS PAAAREHLFD  180
KTVTPSDVGK LNRLVIPKQH AEKHFPLQLP AAGGESKGLL LNFEDAAGKV WRFRYSYWNS  240
SQSYVLTKGW SRFVKEKGLG AGDVVGFYRS AAGSTGEDTK LFIDCKLRPD TNSPASADPV  300
DQSAPVQKAV RLFGVDLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-99RAV family protein