PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG041070.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1837aa MW: 205062 Da PI: 5.1375

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG041070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	54	108	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql++Le+ + ++yps+++r+eL+ k+gL++rq ++WF+ rR k++k TRIDC3BG041070.1 54 KRMMKTPYQLDVLEQTYLAEQYPSEAMRAELSVKIGLSDRQLQMWFCHRRLKDRK 108 79999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1837 aa Download sequence
VLAAMDAAGA GDGPPREAPE ERTPQTPAPP AVAAPASASG GAAGPSGSGE KPVKRMMKTP 60 YQLDVLEQTY LAEQYPSEAM RAELSVKIGL SDRQLQMWFC HRRLKDRKPP AKRQRRDEEG 120 PATPVPVPPQ VLPIQAMLLG STDIMMSAGS PYDEPLLPPT HSRRGAGRSS AVPRISAPDI 180 GRRYYEPLSV MLPPPVAPMQ FRQAELRVIT SVESQLGEPL REDGPVLGVD FDPLPPGAFG 240 APIVPEQQKQ PVRSYDAKIF SRHDPNLLKV SSFLPSMEHP FVPNSFAGKR KSMVGNPPPQ 300 VHPHGGSRAV HEYQFLPEQP SDTYERASRS HYYDTPVEAS NSRIPSLTPG PHLLHVSEEM 360 TPGYAFEGQG LLPQSGRPQV FSAVSTDYEM NQSNSNINSV PVDGQFGSSH VAGFEDPLIS 420 SETRAYHDED ASRVDRKRKH NEEAKIAKEV EAHEKRIRKE LEKQDIMRRK REEQMRKEME 480 RHDRERRKEE ERLLRERQRE EERFQREQRR EHERMEKFLQ KQSRRAEKQR QKEELRKEKE 540 MARQKAANER ATARRIAREY MELVEDERLE LMELAAQSKG LPSMLCLDSD TLQQLDSFRG 600 MLSHFPPEMV RLKAPLSIKP WTGSEESVGK LLMVWKFLIT FADVLELSSV TLDEFIQSLH 660 DYDSRLLGEL HVALLKSIIK DIEDVARTPS VALGVNPGGG HPQIVEGAYS WGFNIRNWQR 720 HLNLLTWPEI LRQFALSAGF GPQLKKRNAE DVFYRDENEG QDGQNVISAL RNGSAAVRAA 780 ALMKERGYTH RRSRHRLTPG TVKFAAFHVL SLEDSSGLTI LEVAEKIQKS GLRDLTTSKT 840 PEASIAAALS RDTKLFERTA PSTYCVKSPY RKDPADSEAV LSAAREKIRA FQNVLSDSEA 900 EKEVDDVDRD EESDCDDDPD GDDVNIEVGD EKGPLLAVKA QGVIPTATKV GDVKGDPDDL 960 DAALTQPISS TTSRKDIAML SLGDSSAVGT SSVSPLRASS DHPEVITGDP EDTQIDESNQ 1020 GESWVQGLAE GDYCDLSVEE RLNALVALVG VATEGNSIRA VLEERLEAAN AIKKQMWAEA 1080 QLDKRRSKEE FASKVQYNSY TSLKADVIPE NNATETTPTP NEILNQQNNA GIVSYERNGT 1140 GQETSATPDN LSAQQYAYAD KTRSQLKSYI GHRAEQLYVY RLLPLGQDRR RNRYWQFSTS 1200 TSPNDPGSGR IFFESREGYW RVIDSEEVFD ALVASLDTRG SREAQLHSML QRVESTFKEG 1260 IKRKRDAAIE QSAGRYLKNG ATDTMRASYR SEFGSPSSTH SSVSADSATT YSDSFKIELG 1320 RNDVEKISIS KRADGFLKWM WSECCDRQLT CAMKYGKKRC SALMHSCNYC YQIYLAEERH 1380 CSSCHKTFKS IYNYSEHTSQ CDEKRRTDPN WKMQIADYSV PIGMRLLKLQ LATIEASIPS 1440 EALQPFWSDG YRKSWGVKLH STTSIEEIFQ MLTLLEGAIR RDYLSSDFET SNELLNNSKT 1500 EDMPSQNPSS LPGTSVLPWV PDTTAAITLR MLDLDYAVSY VQNQKKERDG GDSMKLASRY 1560 TVVKKAQDLE PLEPTGFDLY DARGSPSSGR RGRGRGSRGG SRGGRGRSRG GRIPRGISSS 1620 SRIEFMDEDA AYEKAPRKNA RRGRGRGRGR GRGRRTVRPR QPSSEGRGRS IPKANLLGSF 1680 SMLSNVKPSA VEESPRSSGA EEWGLESRRP YIQGDGDENS SESESDQSED NGENGQPMDE 1740 EYEEQVPDYS RAYSGGLRPH AHVMMDDETE DDDEDAEGDG EGDEEEYDVN HASADVDDEM 1800 DEDDDDIGND GDDGGDGVEV NADEDEGATS YSSEYSE

Sequence ? help Back to Top

Protein Sequence Length: 1837 aa Download sequence

VLAAMDAAGA GDGPPREAPE ERTPQTPAPP AVAAPASASG GAAGPSGSGE KPVKRMMKTP  60
YQLDVLEQTY LAEQYPSEAM RAELSVKIGL SDRQLQMWFC HRRLKDRKPP AKRQRRDEEG  120
PATPVPVPPQ VLPIQAMLLG STDIMMSAGS PYDEPLLPPT HSRRGAGRSS AVPRISAPDI  180
GRRYYEPLSV MLPPPVAPMQ FRQAELRVIT SVESQLGEPL REDGPVLGVD FDPLPPGAFG  240
APIVPEQQKQ PVRSYDAKIF SRHDPNLLKV SSFLPSMEHP FVPNSFAGKR KSMVGNPPPQ  300
VHPHGGSRAV HEYQFLPEQP SDTYERASRS HYYDTPVEAS NSRIPSLTPG PHLLHVSEEM  360
TPGYAFEGQG LLPQSGRPQV FSAVSTDYEM NQSNSNINSV PVDGQFGSSH VAGFEDPLIS  420
SETRAYHDED ASRVDRKRKH NEEAKIAKEV EAHEKRIRKE LEKQDIMRRK REEQMRKEME  480
RHDRERRKEE ERLLRERQRE EERFQREQRR EHERMEKFLQ KQSRRAEKQR QKEELRKEKE  540
MARQKAANER ATARRIAREY MELVEDERLE LMELAAQSKG LPSMLCLDSD TLQQLDSFRG  600
MLSHFPPEMV RLKAPLSIKP WTGSEESVGK LLMVWKFLIT FADVLELSSV TLDEFIQSLH  660
DYDSRLLGEL HVALLKSIIK DIEDVARTPS VALGVNPGGG HPQIVEGAYS WGFNIRNWQR  720
HLNLLTWPEI LRQFALSAGF GPQLKKRNAE DVFYRDENEG QDGQNVISAL RNGSAAVRAA  780
ALMKERGYTH RRSRHRLTPG TVKFAAFHVL SLEDSSGLTI LEVAEKIQKS GLRDLTTSKT  840
PEASIAAALS RDTKLFERTA PSTYCVKSPY RKDPADSEAV LSAAREKIRA FQNVLSDSEA  900
EKEVDDVDRD EESDCDDDPD GDDVNIEVGD EKGPLLAVKA QGVIPTATKV GDVKGDPDDL  960
DAALTQPISS TTSRKDIAML SLGDSSAVGT SSVSPLRASS DHPEVITGDP EDTQIDESNQ  1020
GESWVQGLAE GDYCDLSVEE RLNALVALVG VATEGNSIRA VLEERLEAAN AIKKQMWAEA  1080
QLDKRRSKEE FASKVQYNSY TSLKADVIPE NNATETTPTP NEILNQQNNA GIVSYERNGT  1140
GQETSATPDN LSAQQYAYAD KTRSQLKSYI GHRAEQLYVY RLLPLGQDRR RNRYWQFSTS  1200
TSPNDPGSGR IFFESREGYW RVIDSEEVFD ALVASLDTRG SREAQLHSML QRVESTFKEG  1260
IKRKRDAAIE QSAGRYLKNG ATDTMRASYR SEFGSPSSTH SSVSADSATT YSDSFKIELG  1320
RNDVEKISIS KRADGFLKWM WSECCDRQLT CAMKYGKKRC SALMHSCNYC YQIYLAEERH  1380
CSSCHKTFKS IYNYSEHTSQ CDEKRRTDPN WKMQIADYSV PIGMRLLKLQ LATIEASIPS  1440
EALQPFWSDG YRKSWGVKLH STTSIEEIFQ MLTLLEGAIR RDYLSSDFET SNELLNNSKT  1500
EDMPSQNPSS LPGTSVLPWV PDTTAAITLR MLDLDYAVSY VQNQKKERDG GDSMKLASRY  1560
TVVKKAQDLE PLEPTGFDLY DARGSPSSGR RGRGRGSRGG SRGGRGRSRG GRIPRGISSS  1620
SRIEFMDEDA AYEKAPRKNA RRGRGRGRGR GRGRRTVRPR QPSSEGRGRS IPKANLLGSF  1680
SMLSNVKPSA VEESPRSSGA EEWGLESRRP YIQGDGDENS SESESDQSED NGENGQPMDE  1740
EYEEQVPDYS RAYSGGLRPH AHVMMDDETE DDDEDAEGDG EGDEEEYDVN HASADVDDEM  1800
DEDDDDIGND GDDGGDGVEV NADEDEGATS YSSEYSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1642	1651	RGRGRGRGRG
2	1642	1652	RGRGRGRGRGR
3	1644	1653	RGRGRGRGRG
4	1644	1654	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG041070.1