PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC3BG037700.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 198aa MW: 22027.3 Da PI: 8.4806

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG037700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.3e-09	18	42	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+ +tG C yG +C+F+H+ TRIDC3BG037700.1 18 GEVDCSFYIKTGSCMYGRTCRFNHP 42 6899********************8 PP
2	zf-CCCH	36.3	9.5e-12	87	111	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRIDC3BG037700.1 87 GETVCDFYKKTGFCKFSERCKFHHP 111 6789********************9 PP
3	zf-CCCH	40.4	4.7e-13	144	167	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3BG037700.1 144 EACAYYMKTGACKFGVQCKFDHPP 167 78********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MSITVVLFNT FSLPVLQGEV DCSFYIKTGS CMYGRTCRFN HPGRHIQASV VPGEMLNPAA 60 KFLPSFDFRV THVPIEPEPI TYPQRPGETV CDFYKKTGFC KFSERCKFHH PVDRSAPDSI 120 AKWEPSQQPV TLTVAGFPRR EDAEACAYYM KTGACKFGVQ CKFDHPPLGE AIAKVSKHGE 180 GKEGGKKKAV GLSYVLEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-53	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG037700.1