PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG037360.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 873aa MW: 91387.9 Da PI: 4.1451

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG037360.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.2	2.1e-11	833	857	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3BG037360.3 833 CGSCRELIAYPRGAVHVQCAACRTI 857 ***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MLSSPEIGPP SENKPMISPP PFPSAPPPQE TPQPTTADPL EPAQSDHAES TPPSHPGLTA 60 TSPEACESTV SAPAHIDGKK REAGRPPSLS ASPALEATKL EQHASPLPPP AAEAFPEAAT 120 TEASPSPSHQ IVAASVAETP SPSTPSSPPA WTAGALSDGS LADSAAVVSE EAGRLPAALE 180 SMDANRPTAP APPTLPVKSE PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPRQVEAA 240 HGLPDAAQTN AIAVTSEEPG APSVCKSDSE GSFEVAMHIP LSSPTEAEPC SPDMAPPGFE 300 KFKFLWPPLP PPNLSVETAH SLLNSAVPEG VANPLPVLET MDTKVVAARN LPLPSSESGA 360 EEPLWQPLLR SPSPITQAEP CSPDMPPPGF ENFKLSCMPL SNENTYASSD VIATKAVAVT 420 PEEAVLSVPT LEAIDVETDS ACNLLPPLGS KLEGLLKQPL LRSTTPVAES PPCSPEIAPP 480 GFESFRLSWQ PLSTPPSGTA YIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV 540 PLESGVEGSL QEPQPRPPSP ISQDVPSSPD MAPPGFENFK SSQLLLPSPV FSQTAFTLHD 600 STTTIAEYVS EEAAQLSPAL ETIDVKMETS PESGAEGSLP QQMHWRPSPK ENSTACSPEM 660 VPSGHENLQP LPYPAFLPQA QTPDVVATGA VIGALDQMHH PAPVLGTIEE GTSPILSPPL 720 ESGSLPQLEP QMNSVTAHVV DTPMHVPATD CVAVNSEGPV LPPPALQAMV TNMDSATTLL 780 PRFENGAEGS LPQLRQQSSS PNVQAAPCSL DAVELLPPPP PPFINKEVGQ MVCGSCRELI 840 AYPRGAVHVQ CAACRTINLV VEGTYHFYFV QQF

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MLSSPEIGPP SENKPMISPP PFPSAPPPQE TPQPTTADPL EPAQSDHAES TPPSHPGLTA  60
TSPEACESTV SAPAHIDGKK REAGRPPSLS ASPALEATKL EQHASPLPPP AAEAFPEAAT  120
TEASPSPSHQ IVAASVAETP SPSTPSSPPA WTAGALSDGS LADSAAVVSE EAGRLPAALE  180
SMDANRPTAP APPTLPVKSE PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPRQVEAA  240
HGLPDAAQTN AIAVTSEEPG APSVCKSDSE GSFEVAMHIP LSSPTEAEPC SPDMAPPGFE  300
KFKFLWPPLP PPNLSVETAH SLLNSAVPEG VANPLPVLET MDTKVVAARN LPLPSSESGA  360
EEPLWQPLLR SPSPITQAEP CSPDMPPPGF ENFKLSCMPL SNENTYASSD VIATKAVAVT  420
PEEAVLSVPT LEAIDVETDS ACNLLPPLGS KLEGLLKQPL LRSTTPVAES PPCSPEIAPP  480
GFESFRLSWQ PLSTPPSGTA YIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV  540
PLESGVEGSL QEPQPRPPSP ISQDVPSSPD MAPPGFENFK SSQLLLPSPV FSQTAFTLHD  600
STTTIAEYVS EEAAQLSPAL ETIDVKMETS PESGAEGSLP QQMHWRPSPK ENSTACSPEM  660
VPSGHENLQP LPYPAFLPQA QTPDVVATGA VIGALDQMHH PAPVLGTIEE GTSPILSPPL  720
ESGSLPQLEP QMNSVTAHVV DTPMHVPATD CVAVNSEGPV LPPPALQAMV TNMDSATTLL  780
PRFENGAEGS LPQLRQQSSS PNVQAAPCSL DAVELLPPPP PPFINKEVGQ MVCGSCRELI  840
AYPRGAVHVQ CAACRTINLV VEGTYHFYFV QQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-11	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG037360.3