PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG028190.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 330aa    MW: 35361.3 Da    PI: 8.452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG028190.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.72.9e-11934227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C+++ +tG+Ck+G++CkF+H++
  TRIDC3BG028190.2  9 GEKECSYYIKTGHCKFGSTCKFHHPE 34
                      6789********************96 PP
2zf-CCCH391.4e-12164190127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++++tGtCk+G++Ck++H++
  TRIDC3BG028190.2 164 PGQPECHHYMKTGTCKFGSTCKYNHPQ 190
                       5789*********************97 PP
3zf-CCCH25.91.7e-08213235426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        +C ++++ G+Ck+G+ CkF H+
  TRIDC3BG028190.2 213 QPCLYYSQHGFCKFGPGCKFDHP 235
                       69********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MKILFVMQGE KECSYYIKTG HCKFGSTCKF HHPEGPEHGV VSETPNMYPP VQQLPVSSPL  60
PYPPLASWQL GRPSVLPGSF FPGSYPPMMH PSAVMPMQGW NPYMPPINQV ASAGGQQTVQ  120
AGSLYGLSHQ GPPSAVAYGS NYASLSSSTW PSIDKQEVVF PERPGQPECH HYMKTGTCKF  180
GSTCKYNHPQ YLSTPRSNYM LSPLGLPIRP GAQPCLYYSQ HGFCKFGPGC KFDHPLGALS  240
YSPSASSLGD VPIAPYPLSL PVAPMAPSPS SSGLRPDYIL AKDSSANQPA SPGTTFGNAG  300
QLSKIYAPHM LLRPPTSATG ATVTIHGGEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.19e-74C3H family protein