PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC3BG025100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 38630.7 Da PI: 4.3869 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd + r r++lg+f+taeeAak ++ a+ kl+g TRIDC3BG025100.2 123 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIKLRG 172 69*******.**********88.....55*************************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence |
SSMWPMEEEF FMAVKRTEHV EVTSRSVAAS AKGKEAFGGV EQPKMVRVFC DDFDATDSSS 60 DEEEGERRRV KRYVQEIRLQ PAVQVKVEES APVAKAASAT ATTRPRVMVP VRKRKAEAGG 120 ERRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA KVYDSAAIKL RGPDATVNFQ 180 QSEDGEDMEV PTEVAERLPQ PPAGSKNGSS SATSYDSCEE SHVAAASPTS VLRSFPQSTL 240 AAAVDDDASK KPSSSSSTTE TDESSGVFGC SFSGDDFAGE LAPLYTDFDL LSDFAEPPMD 300 FLSNLPEPAF TFSSDCSLSA YNPCPPSPAA LQQADEFFED ITDLFQIDPL PVI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 114 | 131 | RKAEAGGERRFRGVRRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11140.1 | 4e-22 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC3BG025100.2 |