PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG021750.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-X1

Protein Properties

Length: 486aa MW: 52336.1 Da PI: 8.1458

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG021750.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.2	2.4e-05	204	221	3	20
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 +H+C lCH+GpCppCp+ TRIDC3BG021750.2 204 EHTCLLLCHPGPCPPCPA 221 7***************95 PP
2	zf-NF-X1	22.4	2.6e-07	363	382	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+HkC + CH+GpC++ C+ TRIDC3BG021750.2 363 CGRHKCPERCHRGPCDVtCR 382 ****************97 PP
3	zf-NF-X1	18.2	5.6e-06	416	433	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ C+ G+CppC TRIDC3BG021750.2 416 CGRHACKRRCCVGDCPPC 433 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
SYAAAAAAAS SSRKPAPFTT ATATTRKPAP LPAPAPPPSN PSHVSDSDPS SYSSSGEETD 60 LSACDPATAS VLSTYLSVAG NGADLSKVGI FLNSAARRRS PPCLICLDPI RPSDPVWSCS 120 ASCFALLHLP CIQSWAHQSA SAAPSPTWGC PKCRVAYPKS QTPTSYHCFC SKTEDPPADP 180 WILPHSCGDV CGRRLNSNPD SGCEHTCLLL CHPGPCPPCP AVVPNAQCFC GAHREPRRCA 240 HQRYSCKGKC NKRLSCELHR CPVDCHDGPC PPCAVRGNHK CECGETMVER LCSERVFQCK 300 RECSGMLECG KHRCERGCHG GKCGECPLRG QRTCPCGKKD YPRLECDVEA ATCGSTCEKV 360 LGCGRHKCPE RCHRGPCDVT CRLVIKKSCR CGGLKKELPC HQDLTCERKC QRLRACGRHA 420 CKRRCCVGDC PPCAEVHFFF AFHDFGSFQV SSTKKINACR LVIGGSDVET ISVSLHATEA 480 LVHLVL

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

SYAAAAAAAS SSRKPAPFTT ATATTRKPAP LPAPAPPPSN PSHVSDSDPS SYSSSGEETD  60
LSACDPATAS VLSTYLSVAG NGADLSKVGI FLNSAARRRS PPCLICLDPI RPSDPVWSCS  120
ASCFALLHLP CIQSWAHQSA SAAPSPTWGC PKCRVAYPKS QTPTSYHCFC SKTEDPPADP  180
WILPHSCGDV CGRRLNSNPD SGCEHTCLLL CHPGPCPPCP AVVPNAQCFC GAHREPRRCA  240
HQRYSCKGKC NKRLSCELHR CPVDCHDGPC PPCAVRGNHK CECGETMVER LCSERVFQCK  300
RECSGMLECG KHRCERGCHG GKCGECPLRG QRTCPCGKKD YPRLECDVEA ATCGSTCEKV  360
LGCGRHKCPE RCHRGPCDVT CRLVIKKSCR CGGLKKELPC HQDLTCERKC QRLRACGRHA  420
CKRRCCVGDC PPCAEVHFFF AFHDFGSFQV SSTKKINACR LVIGGSDVET ISVSLHATEA  480
LVHLVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	1e-122	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG021750.2