PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG008350.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 359aa    MW: 38643.5 Da    PI: 9.6275
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG008350.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.8e-1264112155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r +r++lg+f  ++ Aa+a++ a+++++g
  TRIDC3BG008350.2  64 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEDSAARAYDVAALRYRG 112
                       689***9788.8*********......44**********99*************98 PP
2B394.86e-30178273187
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  TRIDC3BG008350.2 178 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWTFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSC 270
                       89*************************9987776644455999************************************************96 PP

                       -SS CS
                B3  85 dgr 87 
                       +  
  TRIDC3BG008350.2 271 SAY 273
                       543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
QPAMGVEILS STGEPSSQYS SGAVSTATTE SGIGGRLPTA PSLPVAIADE SVTSRSAPAQ  60
SASSRFKGVV PQPNGRWGAQ IYERHARVWL GTFPDEDSAA RAYDVAALRY RGREAATNFP  120
CAAAEAELAF LAAHSKAEIV DMLRKHTYAD ELRQGLRRGR GMGARAQPTP SWAREPLFEK  180
AVTPSDVGKL NRLVVPKQHA EKHFPLKRTP ETTTTTGKGV LLNFEDGEGK VWTFRYSYWN  240
SSQSYVLTKG WSRFVREKGL GAGDSIVFSC SAYGQEKQFF IDCKKNKTMA SCPADGGAAT  300
ASPPVAEAAN GEQVRVVRLF GVDIAGEKRG RAAPAEQELF KRQCVAHSQH SPALGAIVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-90RAV family protein