PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG008350.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 357aa    MW: 38569.3 Da    PI: 9.6107
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG008350.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.8e-1273121155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r +r++lg+f  ++ Aa+a++ a+++++g
  TRIDC3BG008350.1  73 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEDSAARAYDVAALRYRG 121
                       689***9788.8*********......44**********99*************98 PP
2B394.86e-30187282187
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  TRIDC3BG008350.1 187 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWTFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSC 279
                       89*************************9987776644455999************************************************96 PP

                       -SS CS
                B3  85 dgr 87 
                       +  
  TRIDC3BG008350.1 280 SAY 282
                       543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
TPGQETTEKQ PAMGVEILSS TGEPSSQYSS GAVSTATTES GIGGRLPTAP SLPVAIADES  60
VTSRSAPAQS ASSRFKGVVP QPNGRWGAQI YERHARVWLG TFPDEDSAAR AYDVAALRYR  120
GREAATNFPC AAAEAELAFL AAHSKAEIVD MLRKHTYADE LRQGLRRGRG MGARAQPTPS  180
WAREPLFEKA VTPSDVGKLN RLVVPKQHAE KHFPLKRTPE TTTTTGKGVL LNFEDGEGKV  240
WTFRYSYWNS SQSYVLTKGW SRFVREKGLG AGDSIVFSCS AYGQEKQFFI DCKKNKTMAS  300
CPADGGAATA SPPVAEAANG EQVRVVRLFG VDIAGEKRGR AAPAEQELFK RQCVAHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-90RAV family protein