PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG008320.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 342aa MW: 37232.1 Da PI: 5.6652

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG008320.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.8	4.9e-12	69	117	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f ++ Aa+a++ a+++++g TRIDC3BG008320.2 69 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 117 689*9788.8*****3.....5******99***********98 PP
2	B3	93.8	1.2e-29	193	285	1	85
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk+ ae+h g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++ TRIDC3BG008320.2 193 FEKAVTPSDVGKLNRLVVPKQQAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 285 89**************************99996666899***********************************************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
NHAPISIYTQ EITNYAGTII PTMASGKPTN HGMEDDNDME YSSAESGAED AVEPSSSPVL 60 APPRAALSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFPD EDAAARAYDV AALRFRGPDA 120 VINHQRPTAA EEAGSSSSRS ELDPELGFLA DHSKAEIVDM LRKHTYDDEL RQGLRRGRGR 180 AQPTPAWARE LLFEKAVTPS DVGKLNRLVV PKQQAEKHFP PTTAAATGSN GKGVLLNFED 240 GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK ETGLRAGDTV AFYRSAYGND TEDQLFIDYK 300 KMNKNDDAAD AAISDENETG HVAVKLFGVD IAGGGMAGSS GG

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

NHAPISIYTQ EITNYAGTII PTMASGKPTN HGMEDDNDME YSSAESGAED AVEPSSSPVL  60
APPRAALSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFPD EDAAARAYDV AALRFRGPDA  120
VINHQRPTAA EEAGSSSSRS ELDPELGFLA DHSKAEIVDM LRKHTYDDEL RQGLRRGRGR  180
AQPTPAWARE LLFEKAVTPS DVGKLNRLVV PKQQAEKHFP PTTAAATGSN GKGVLLNFED  240
GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK ETGLRAGDTV AFYRSAYGND TEDQLFIDYK  300
KMNKNDDAAD AAISDENETG HVAVKLFGVD IAGGGMAGSS GG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25730.1	1e-86	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG008320.2