PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG008320.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 352aa MW: 38333.5 Da PI: 6.3267

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG008320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5.1e-12	79	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f ++ Aa+a++ a+++++g TRIDC3BG008320.1 79 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 127 689*9788.8*****3.....5******99***********98 PP
2	B3	93.7	1.3e-29	203	295	1	85
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk+ ae+h g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++ TRIDC3BG008320.1 203 FEKAVTPSDVGKLNRLVVPKQQAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 295 89**************************99996666899***********************************************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
SIQRKCKIGS NHAPISIYTQ EITNYAGTII PTMASGKPTN HGMEDDNDME YSSAESGAED 60 AVEPSSSPVL APPRAALSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFPD EDAAARAYDV 120 AALRFRGPDA VINHQRPTAA EEAGSSSSRS ELDPELGFLA DHSKAEIVDM LRKHTYDDEL 180 RQGLRRGRGR AQPTPAWARE LLFEKAVTPS DVGKLNRLVV PKQQAEKHFP PTTAAATGSN 240 GKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK ETGLRAGDTV AFYRSAYGND 300 TEDQLFIDYK KMNKNDDAAD AAISDENETG HVAVKLFGVD IAGGGMAGSS GG

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

SIQRKCKIGS NHAPISIYTQ EITNYAGTII PTMASGKPTN HGMEDDNDME YSSAESGAED  60
AVEPSSSPVL APPRAALSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFPD EDAAARAYDV  120
AALRFRGPDA VINHQRPTAA EEAGSSSSRS ELDPELGFLA DHSKAEIVDM LRKHTYDDEL  180
RQGLRRGRGR AQPTPAWARE LLFEKAVTPS DVGKLNRLVV PKQQAEKHFP PTTAAATGSN  240
GKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK ETGLRAGDTV AFYRSAYGND  300
TEDQLFIDYK KMNKNDDAAD AAISDENETG HVAVKLFGVD IAGGGMAGSS GG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25730.1	2e-86	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG008320.1