PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG060020.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 316aa MW: 34946.6 Da PI: 9.1387 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 16 | 40 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.3 16 QPECQYYLKTGTCKFGPTCKFHHPR 40 799********************96 PP | |||||||
2 | zf-CCCH | 38.7 | 1.6e-12 | 62 | 86 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.3 62 ERECAYYLKTGQCKYGNTCKFNHPE 86 799********************96 PP | |||||||
3 | zf-CCCH | 35.1 | 2.2e-11 | 209 | 234 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.3 209 DQPECIYYIKTGDCKFGAVCKFHHPR 234 689*********************96 PP | |||||||
4 | zf-CCCH | 42.2 | 1.3e-13 | 254 | 280 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.3 254 PGEELCKFYSRYGICKFGVNCKFDHPM 280 689**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence |
IASARMKGEY PERVGQPECQ YYLKTGTCKF GPTCKFHHPR EKAGIAGMVQ LNTLGYPLRP 60 NERECAYYLK TGQCKYGNTC KFNHPEIFNA VASSRGSPIY PPVHNSGSTG PHSYTGTMAS 120 WTYPRGSFIP SPRWQSPSNY TPMIVPQGLV QVPSWNSYPS PGAQQYYGTS RQGEASAGNQ 180 GMQSSYRSSS FPAPQYALQR ENVFPERPDQ PECIYYIKTG DCKFGAVCKF HHPRVRSQPP 240 PDCILSPMGL PLRPGEELCK FYSRYGICKF GVNCKFDHPM AAPMGVYAYG YSASASPNAP 300 MARRLLESPS GSAYAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG060020.3 |