PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3AG040620.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 833aa MW: 91588.8 Da PI: 6.5763 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.1 | 1.9e-10 | 604 | 643 | 13 | 52 |
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e LA++lgLt q++ WF R TRIDC3AG040620.11 604 QKLKAYFEKEPYPSRPAKESLAQELGLTFHQITRWFSSTR 643 78**********************************8776 PP | |||||||
2 | PHD | 42.1 | 2e-14 | 241 | 296 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3AG040620.11 241 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 296 7******65555********77*********************999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 833 aa Download sequence |
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD 60 KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN 120 EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW 180 KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI 240 FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI 300 DLLNELQGST LAMHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDENK 360 SSAEDGDEGS DSDDLDFITS SDESEPSKKK RSESKNKNTV NDLALPSDDS EDDDFDPEGP 420 NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS 480 VLPASNRRQV GHLDYKKLYD VCLFLAFLRT INEAYGKETT DSSDEEEWSG HSPNGNPEDS 540 DTDSFAGPLK PAKTRRARGG RQNNERTPQS ERHSGSVSEQ HPEVLSNGTS STARKKSYGP 600 IVNQKLKAYF EKEPYPSRPA KESLAQELGL TFHQITRWFS STRHYSRVSA AKKGKRLENY 660 TAENNDGIAA DSIQQREPNG SVLGKPNVDR NGIVSEERMA QKNLDEGERE DTPFRQHIGC 720 EQTLDGTPPA NKHNTANSRN DTSRNAEDTP LGQDIGCEQT VAAVNQNCTI GSSNVGSPKG 780 APGGNKRLKN SPRSVGSPRR GSAEKNIPGL EHVDEARRKA ILRELRKMKA AGR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 137 | KKKVPNEPVNDSTAAQPAARKRK |
2 | 133 | 139 | ARKRKRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 8e-81 | HB-PHD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3AG040620.11 |