PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC3AG040620.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 619aa MW: 68150.8 Da PI: 5.2733

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG040620.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.3	1.6e-05	594	619	13	38
HHHHHHHHHSSS--HHHHHHHHHHCT CS Homeobox 13 eeLeelFeknrypsaeereeLAkklg 38 + L+++Fek++yps+ ++e LA++lg TRIDC3AG040620.10 594 QKLKAYFEKEPYPSRPAKESLAQELG 619 78*********************996 PP
2	PHD	42.6	1.4e-14	243	298	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3AG040620.10 243 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 298 7****65555****77*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD 60 KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN 120 EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW 180 KGQRCSLEKI RPEKELERAK AEILRCKLRI REAFRNMDSL LLEGKLDESL FDSEGEISSE 240 DIFCAICASK HVTLKNDIIL CDGVCDRGFH QKCLNPPLLA EDIPQGDEGW LCPACDCKLD 300 CIDLLNELQG STLAMHDSWE KVFPESTSNG LNQIGASDLP SDDSEEDYDP TLAEGDTVDE 360 NKSSAEDGDE GSDSDDLDFI TSSDESEPSK KKRSESKNKN TVNDLALPSD DSEDDDFDPE 420 GPNSSEDQKT KTNSDESDFT SDSDDFCAEI SKSSGKDKVS APSFSDQTNG VDIMEAELEQ 480 DSVLPASNRR QVGHLDYKKL YDEAYGKETT DSSDEEEWSG HSPNGNPEDS DTDSFAGPLK 540 PAKTRRARGG RQNNERTPQS ERHSGSVSEQ HPEVLSNGTS STARKKSYGP IVNQKLKAYF 600 EKEPYPSRPA KESLAQELG

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIIANK KYPLRSAHSS TRVLRSTSKD  60
KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN  120
EPVNDSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW  180
KGQRCSLEKI RPEKELERAK AEILRCKLRI REAFRNMDSL LLEGKLDESL FDSEGEISSE  240
DIFCAICASK HVTLKNDIIL CDGVCDRGFH QKCLNPPLLA EDIPQGDEGW LCPACDCKLD  300
CIDLLNELQG STLAMHDSWE KVFPESTSNG LNQIGASDLP SDDSEEDYDP TLAEGDTVDE  360
NKSSAEDGDE GSDSDDLDFI TSSDESEPSK KKRSESKNKN TVNDLALPSD DSEDDDFDPE  420
GPNSSEDQKT KTNSDESDFT SDSDDFCAEI SKSSGKDKVS APSFSDQTNG VDIMEAELEQ  480
DSVLPASNRR QVGHLDYKKL YDEAYGKETT DSSDEEEWSG HSPNGNPEDS DTDSFAGPLK  540
PAKTRRARGG RQNNERTPQS ERHSGSVSEQ HPEVLSNGTS STARKKSYGP IVNQKLKAYF  600
EKEPYPSRPA KESLAQELG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	137	KKKVPNEPVNDSTAAQPAARKRK
2	133	139	ARKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-80	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG040620.10