PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC3AG032870.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 750aa MW: 79258 Da PI: 4.3296

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG032870.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.3	1.9e-11	660	684	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3AG032870.4 660 CGSCRELIAYPRGAVHVQCAACGTI 684 **********************997 PP
2	zf-LSD1	39.6	8.7e-13	698	722	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+YP+GAp+V+C+lC +V TRIDC3AG032870.4 698 CGRCEILLMYPFGAPAVKCSLCLFV 722 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
RLPAALESMD ANRPTAPAPP TLPLKSEPEG LLPQQHRRPP WPTVLPGCEN FEHSQPPSPR 60 PPQVEAAHGL PDAAQTNAIA VTSEEPGAPS AWKSDSEGSF EVAMHIPLSS PTEAEPCSPD 120 MAPPGFEKFK FSWPPLPPPN LSVKTAHSLL NPAVPEGVAK PLPVLETMDT KAVAARNLPL 180 PSSESGAEEP LWQPLLRSPS LITQAEPCSP DMPPPGFENF KLSCMPLSNE NTYASSDVIA 240 AKAVAVAPEE AVLPVPTLKA IDVETDSACN LLPPLGSKLE GLLKQPSLRS TTPVAESGPC 300 SPEIAPPGFE SFRLSWQPSS TPPSGTAYIM PDAAVMPLPV TLEEAAGSPP ALEAMDVDMN 360 AIHPLTVPLE SGVEGSLQEP QPRPPSPILQ DVPSSPDMAP PGFENFKSSR LLLPSPVFSQ 420 TAYTLHDSTT TIAEYVSEEA AQLSPALEAI DVKMETSPES GAEGSLPQQL HWRPSPKENS 480 TACSPEMVPS GHENLQPLPY PAFLPQAQTP DVVATGVVIG ALDQVRHPAP VLGTIEEGTS 540 PILSPPLEGG SLPQLEPQMN SVTAHVVDTP THVPTTDCVA VNSEGTVLPP PALQAMVTNM 600 DSATTSLPRL ENGAEGSLPQ LRQQSSSPNV QAAPCSLDAV ELLPPPPPPF VNKEVGQMVC 660 GSCRELIAYP RGAVHVQCAA CGTINLVLEA HEVGNVHCGR CEILLMYPFG APAVKCSLCL 720 FVTEIGERNV RRRISVEQVT PHQQELANQV

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

RLPAALESMD ANRPTAPAPP TLPLKSEPEG LLPQQHRRPP WPTVLPGCEN FEHSQPPSPR  60
PPQVEAAHGL PDAAQTNAIA VTSEEPGAPS AWKSDSEGSF EVAMHIPLSS PTEAEPCSPD  120
MAPPGFEKFK FSWPPLPPPN LSVKTAHSLL NPAVPEGVAK PLPVLETMDT KAVAARNLPL  180
PSSESGAEEP LWQPLLRSPS LITQAEPCSP DMPPPGFENF KLSCMPLSNE NTYASSDVIA  240
AKAVAVAPEE AVLPVPTLKA IDVETDSACN LLPPLGSKLE GLLKQPSLRS TTPVAESGPC  300
SPEIAPPGFE SFRLSWQPSS TPPSGTAYIM PDAAVMPLPV TLEEAAGSPP ALEAMDVDMN  360
AIHPLTVPLE SGVEGSLQEP QPRPPSPILQ DVPSSPDMAP PGFENFKSSR LLLPSPVFSQ  420
TAYTLHDSTT TIAEYVSEEA AQLSPALEAI DVKMETSPES GAEGSLPQQL HWRPSPKENS  480
TACSPEMVPS GHENLQPLPY PAFLPQAQTP DVVATGVVIG ALDQVRHPAP VLGTIEEGTS  540
PILSPPLEGG SLPQLEPQMN SVTAHVVDTP THVPTTDCVA VNSEGTVLPP PALQAMVTNM  600
DSATTSLPRL ENGAEGSLPQ LRQQSSSPNV QAAPCSLDAV ELLPPPPPPF VNKEVGQMVC  660
GSCRELIAYP RGAVHVQCAA CGTINLVLEA HEVGNVHCGR CEILLMYPFG APAVKCSLCL  720
FVTEIGERNV RRRISVEQVT PHQQELANQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-30	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG032870.4