PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG032870.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 938aa MW: 98137.8 Da PI: 4.3161

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG032870.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35	2.4e-11	848	872	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3AG032870.2 848 CGSCRELIAYPRGAVHVQCAACGTI 872 **********************997 PP
2	zf-LSD1	39.2	1.1e-12	886	910	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+YP+GAp+V+C+lC +V TRIDC3AG032870.2 886 CGRCEILLMYPFGAPAVKCSLCLFV 910 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
FSPSQRPPPL TAPRPMLSSP EIGPPSENKP MISPPLFPSA APPQETPQPT TADPLEPAQS 60 DHAESTPPPH PGVTATSPEA YESTVSAPVH IDGKKREAGR PPSLSASPAL EATKPEQHAS 120 PLPPPAAEAF PEAATTEASP SPSHQIVAAS VVETPSPSTP SSPPASTAGA LSDGSVADSA 180 AMVSEEAGRL PAALESMDAN RPTAPAPPTL PLKSEPEGLL PQQHRRPPWP TVLPGCENFE 240 HSQPPSPRPP QVEAAHGLPD AAQTNAIAVT SEEPGAPSAW KSDSEGSFEV AMHIPLSSPT 300 EAEPCSPDMA PPGFEKFKFS WPPLPPPNLS VKTAHSLLNP AVPEGVAKPL PVLETMDTKA 360 VAARNLPLPS SESGAEEPLW QPLLRSPSLI TQAEPCSPDM PPPGFENFKL SCMPLSNENT 420 YASSDVIAAK AVAVAPEEAV LPVPTLKAID VETDSACNLL PPLGSKLEGL LKQPSLRSTT 480 PVAESGPCSP EIAPPGFESF RLSWQPSSTP PSGTAYIMPD AAVMPLPVTL EEAAGSPPAL 540 EAMDVDMNAI HPLTVPLESG VEGSLQEPQP RPPSPILQDV PSSPDMAPPG FENFKSSRLL 600 LPSPVFSQTA YTLHDSTTTI AEYVSEEAAQ LSPALEAIDV KMETSPESGA EGSLPQQLHW 660 RPSPKENSTA CSPEMVPSGH ENLQPLPYPA FLPQAQTPDV VATGVVIGAL DQVRHPAPVL 720 GTIEEGTSPI LSPPLEGGSL PQLEPQMNSV TAHVVDTPTH VPTTDCVAVN SEGTVLPPPA 780 LQAMVTNMDS ATTSLPRLEN GAEGSLPQLR QQSSSPNVQA APCSLDAVEL LPPPPPPFVN 840 KEVGQMVCGS CRELIAYPRG AVHVQCAACG TINLVLEAHE VGNVHCGRCE ILLMYPFGAP 900 AVKCSLCLFV TEIGERNVRR RISVEQVTPH QQELANQV

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

FSPSQRPPPL TAPRPMLSSP EIGPPSENKP MISPPLFPSA APPQETPQPT TADPLEPAQS  60
DHAESTPPPH PGVTATSPEA YESTVSAPVH IDGKKREAGR PPSLSASPAL EATKPEQHAS  120
PLPPPAAEAF PEAATTEASP SPSHQIVAAS VVETPSPSTP SSPPASTAGA LSDGSVADSA  180
AMVSEEAGRL PAALESMDAN RPTAPAPPTL PLKSEPEGLL PQQHRRPPWP TVLPGCENFE  240
HSQPPSPRPP QVEAAHGLPD AAQTNAIAVT SEEPGAPSAW KSDSEGSFEV AMHIPLSSPT  300
EAEPCSPDMA PPGFEKFKFS WPPLPPPNLS VKTAHSLLNP AVPEGVAKPL PVLETMDTKA  360
VAARNLPLPS SESGAEEPLW QPLLRSPSLI TQAEPCSPDM PPPGFENFKL SCMPLSNENT  420
YASSDVIAAK AVAVAPEEAV LPVPTLKAID VETDSACNLL PPLGSKLEGL LKQPSLRSTT  480
PVAESGPCSP EIAPPGFESF RLSWQPSSTP PSGTAYIMPD AAVMPLPVTL EEAAGSPPAL  540
EAMDVDMNAI HPLTVPLESG VEGSLQEPQP RPPSPILQDV PSSPDMAPPG FENFKSSRLL  600
LPSPVFSQTA YTLHDSTTTI AEYVSEEAAQ LSPALEAIDV KMETSPESGA EGSLPQQLHW  660
RPSPKENSTA CSPEMVPSGH ENLQPLPYPA FLPQAQTPDV VATGVVIGAL DQVRHPAPVL  720
GTIEEGTSPI LSPPLEGGSL PQLEPQMNSV TAHVVDTPTH VPTTDCVAVN SEGTVLPPPA  780
LQAMVTNMDS ATTSLPRLEN GAEGSLPQLR QQSSSPNVQA APCSLDAVEL LPPPPPPFVN  840
KEVGQMVCGS CRELIAYPRG AVHVQCAACG TINLVLEAHE VGNVHCGRCE ILLMYPFGAP  900
AVKCSLCLFV TEIGERNVRR RISVEQVTPH QQELANQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-30	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG032870.2