PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC3AG024970.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 464aa MW: 49629.9 Da PI: 7.7671

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.7e-10	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ TRIDC3AG024970.1 49 PGEANCVYYLRTGACGYGETCRYNHPR 75 57899********************96 PP
2	zf-CCCH	38.3	2.2e-12	97	123	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3AG024970.1 97 PGQPPCEYYMKNGTCKFGSNCKYNHPR 123 5899*********************96 PP
3	zf-CCCH	34.8	2.7e-11	144	168	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.1 144 EKECSYYIKTGHCKFGSTCKFHHPE 168 689********************96 PP
4	zf-CCCH	38.4	2.1e-12	298	324	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3AG024970.1 298 PGQPECHHYMKTGTCKFGSTCKYNHPQ 324 5789*********************97 PP
5	zf-CCCH	25.3	2.6e-08	347	369	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3AG024970.1 347 QPCLYYSQHGFCKFGPGCKFDHP 369 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MMESYAASPK DGGAEGGRAD AATGLEESMW RLGLAGGEEA AGEGLPERPG EANCVYYLRT 60 GACGYGETCR YNHPRDRAAA FDGGTRTART VEYPERPGQP PCEYYMKNGT CKFGSNCKYN 120 HPREGGSVQP VVLNSCGYPL RLGEKECSYY IKTGHCKFGS TCKFHHPEGP EHGVVSETPN 180 MYPPVQQLPV SSPLPYPPLA SWQLGRPSVL PGSFFPGSYP PMMHPSAVMP MQGWNPYMPP 240 INQVASAGGQ QTVQAGPLYG LSHQGPPSAV AYGSNYASLS SSTWPSSDKQ EVVFPERPGQ 300 PECHHYMKTG TCKFGSTCKY NHPQYLSTPR SNYMLSPLGL PIRPGAQPCL YYSQHGFCKF 360 GPGCKFDHPL GALSYSPSAS SLGDVPIAPY PLSLPVAPMA PSPLSSGLRP DYILAKDSSA 420 NQPASPGTTF GNAGQLSKIY APHMLLRPPT SATGATVTIH GGEF

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MMESYAASPK DGGAEGGRAD AATGLEESMW RLGLAGGEEA AGEGLPERPG EANCVYYLRT  60
GACGYGETCR YNHPRDRAAA FDGGTRTART VEYPERPGQP PCEYYMKNGT CKFGSNCKYN  120
HPREGGSVQP VVLNSCGYPL RLGEKECSYY IKTGHCKFGS TCKFHHPEGP EHGVVSETPN  180
MYPPVQQLPV SSPLPYPPLA SWQLGRPSVL PGSFFPGSYP PMMHPSAVMP MQGWNPYMPP  240
INQVASAGGQ QTVQAGPLYG LSHQGPPSAV AYGSNYASLS SSTWPSSDKQ EVVFPERPGQ  300
PECHHYMKTG TCKFGSTCKY NHPQYLSTPR SNYMLSPLGL PIRPGAQPCL YYSQHGFCKF  360
GPGCKFDHPL GALSYSPSAS SLGDVPIAPY PLSLPVAPMA PSPLSSGLRP DYILAKDSSA  420
NQPASPGTTF GNAGQLSKIY APHMLLRPPT SATGATVTIH GGEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024970.1