PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG024940.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 359aa MW: 38910.9 Da PI: 8.0025

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024940.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.6e-13	38	63	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3AG024940.4 38 GEKECSYYMKTGQCKFGSTCKFHHPE 63 6789********************96 PP
2	zf-CCCH	38.9	1.4e-12	191	217	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3AG024940.4 191 PGQPECQYYMRTGDCKFGATCKYHHPR 217 5789*********************96 PP
3	zf-CCCH	34.5	3.5e-11	240	263	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3AG024940.4 240 QPCSYYAQNGYCRYGVACKYDHPM 263 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDSLYVRCEN SLQKHCFFSE IFRLVSLWKI IDTNEMQGEK ECSYYMKTGQ CKFGSTCKFH 60 HPEFGGVPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP VVPGSYMPGS YTPMMLSSGM 120 IPLQGWSPYP ASVNPVASGG VQQTVQAGPM YGIGHHGSSS TIAYGGPYMP YSSSTIQSSN 180 NQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS SPKSNYMFSP FCLPLRPGAQ 240 PCSYYAQNGY CRYGVACKYD HPMGTLGYSS SPFPLSDVPI APYPLGFSIA TLAPSSSSQD 300 LRPEYISAKD PSVNQVGSPV AASEPSGSIL PKGVFPPDTV MRAQTNTTTG GSSSPGGGR

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDSLYVRCEN SLQKHCFFSE IFRLVSLWKI IDTNEMQGEK ECSYYMKTGQ CKFGSTCKFH  60
HPEFGGVPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP VVPGSYMPGS YTPMMLSSGM  120
IPLQGWSPYP ASVNPVASGG VQQTVQAGPM YGIGHHGSSS TIAYGGPYMP YSSSTIQSSN  180
NQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS SPKSNYMFSP FCLPLRPGAQ  240
PCSYYAQNGY CRYGVACKYD HPMGTLGYSS SPFPLSDVPI APYPLGFSIA TLAPSSSSQD  300
LRPEYISAKD PSVNQVGSPV AASEPSGSIL PKGVFPPDTV MRAQTNTTTG GSSSPGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-77	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024940.4