PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG006290.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 353aa    MW: 38650.7 Da    PI: 9.9767
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG006290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75e-1260108155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r +r++lg+f   + Aa+a++ a+++++g
  TRIDC3AG006290.1  60 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 108
                       689***9788.8*********......44*************************98 PP
2B393.21.8e-29174269187
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++++L +gD++vF+ 
  TRIDC3AG006290.1 174 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKDLAAGDSIVFSC 266
                       89*************************99877766444458999***********************************************96 PP

                       -SS CS
                B3  85 dgr 87 
                       +  
  TRIDC3AG006290.1 267 SAY 269
                       543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MGVEILSSTV EHSSQYSSSA STATTESGAA GRSPMALSLP VVIADESVTS RSTSAQLASS  60
RFKGVVPQPN GRWGAQIYER HARVWLGTFP DQDLAARAYD VAALRYRGRD AATNFPCAAA  120
EAELAFLAAH SKAEIVDMLR KHTYADELRQ GLRRGRGMGV RAQPTPSWAR EPLFEKAVTP  180
SDVGKLNRLV VPKQHAEKHF PLKRTPETTT TTGNGVLLNF EDGEGKVWRF RYSYWNSSQS  240
YVLTKGWSRF VREKDLAAGD SIVFSCSAYG QEKQFFIDCK KNTTVDGGKS ASPLPVVETV  300
KGEQVRVVRL FGVDIAGVKR VRAAMAEQGP PELFQRQCVT HGRHSPALGS FVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-99RAV family protein