PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG006200.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 340aa    MW: 36988.9 Da    PI: 5.6923
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG006200.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-1267115155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      + r++lg+f  ++ Aa+a++ a+++++g
  TRIDC3AG006200.2  67 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 115
                       689***9788.8*********3.....5**********99*************98 PP
2B394.19.5e-30191283185
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k+ tpsdv+k++rlv+pk++ae+h         g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++
  TRIDC3AG006200.2 191 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNCKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 283
                       89************************9999999844446899************************************************954 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
APISIYTQEI TNYAGTIIPT MASGKATNHG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP  60
PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI  120
NFQRPPAAEE AGSSSSRSEL DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ  180
PTPAWARELL FEKAVTPSDV GKLNRLVVPK QHAEKHFPPT TAAATGSNCK GVLLNFEDGE  240
GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM  300
NKNDDAADAA ISNENETGHV AVKLFGVDIA GGGMVGSSGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-88RAV family protein