PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG006200.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 353aa MW: 38413.5 Da PI: 6.1201

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG006200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5.1e-12	80	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f ++ Aa+a++ a+++++g TRIDC3AG006200.1 80 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 128 689*9788.8*****3.....5******99***********98 PP
2	B3	94	1e-29	204	296	1	85
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++ TRIDC3AG006200.1 204 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNCKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 296 89**********************9999999844446899**********************************************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
RNCASVKLEA TNHAPISIYT QEITNYAGTI IPTMASGKAT NHGMEDDNDM EYSSAESGAE 60 DAAESSSSPV LAPPRAAPSS RFKGVVPQPN GRWGAQIYEK HSRVWLGTFP DEDAAARAYD 120 VAALRFRGPD AVINFQRPPA AEEAGSSSSR SELDPELGFL ADHSKAEIVD MLRKHTYDDE 180 LRQGLRRGRG RAQPTPAWAR ELLFEKAVTP SDVGKLNRLV VPKQHAEKHF PPTTAAATGS 240 NCKGVLLNFE DGEGKVWRFR YSYWNSSQSY VLTKGWSRFV KETGLRAGDT VAFYRSAYGN 300 DTEDQLFIDY KKMNKNDDAA DAAISNENET GHVAVKLFGV DIAGGGMVGS SGG

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

RNCASVKLEA TNHAPISIYT QEITNYAGTI IPTMASGKAT NHGMEDDNDM EYSSAESGAE  60
DAAESSSSPV LAPPRAAPSS RFKGVVPQPN GRWGAQIYEK HSRVWLGTFP DEDAAARAYD  120
VAALRFRGPD AVINFQRPPA AEEAGSSSSR SELDPELGFL ADHSKAEIVD MLRKHTYDDE  180
LRQGLRRGRG RAQPTPAWAR ELLFEKAVTP SDVGKLNRLV VPKQHAEKHF PPTTAAATGS  240
NCKGVLLNFE DGEGKVWRFR YSYWNSSQSY VLTKGWSRFV KETGLRAGDT VAFYRSAYGN  300
DTEDQLFIDY KKMNKNDDAA DAAISNENET GHVAVKLFGV DIAGGGMVGS SGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-88	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG006200.1