PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG089260.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 484aa MW: 50584.8 Da PI: 8.9346

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG089260.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	232	255	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg +F r ++L+ H++t H TRIDC2BG089260.3 232 FPCPDCGDVFVRAESLHLHQSTcH 255 89********************66 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MVEPSRSAGA KSSITTTTTV RKKKLAATSP ATPKPDKEKP ADQGGKKQQS SHGGAGAAAA 60 AVESPSYRLA LRSLFSCRNS HAAQHQHNQR AAPPQPAPAP ADDASSRRCK KKSKKQTQLG 120 CSASICKLRD ASPRRVTLHR PPAEEDPPSG AAAGAGEPCK RRASVSGGGE RRVKKPLQQQ 180 QHWGSSTASS SSSTAGGGGG SSFRLRRLSG CYECHMVVDP AGGGSSMRAA IFPCPDCGDV 240 FVRAESLHLH QSTCHAVSEL GPEDTSRNII EIIFQSSWLK KQTPVCAVDR ILKVHNAPAT 300 LARFEAYRDA VKARARGGRP GAGRCTADGN ELLRFHCAAL ACSLGAGGAT HLCDGAGNSS 360 CAACGIVRDG FKFRAPGVRT MATSGRAHDD AVAVGGEEGE GGGGERRRAM LVCRVIAGRV 420 KRRCEGTADK EEVEAASPSA EEEAEAEEEY DSVAGTAGVY SSLDELEVFN PTAILPCFVV 480 VYKA

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MVEPSRSAGA KSSITTTTTV RKKKLAATSP ATPKPDKEKP ADQGGKKQQS SHGGAGAAAA  60
AVESPSYRLA LRSLFSCRNS HAAQHQHNQR AAPPQPAPAP ADDASSRRCK KKSKKQTQLG  120
CSASICKLRD ASPRRVTLHR PPAEEDPPSG AAAGAGEPCK RRASVSGGGE RRVKKPLQQQ  180
QHWGSSTASS SSSTAGGGGG SSFRLRRLSG CYECHMVVDP AGGGSSMRAA IFPCPDCGDV  240
FVRAESLHLH QSTCHAVSEL GPEDTSRNII EIIFQSSWLK KQTPVCAVDR ILKVHNAPAT  300
LARFEAYRDA VKARARGGRP GAGRCTADGN ELLRFHCAAL ACSLGAGGAT HLCDGAGNSS  360
CAACGIVRDG FKFRAPGVRT MATSGRAHDD AVAVGGEEGE GGGGERRRAM LVCRVIAGRV  420
KRRCEGTADK EEVEAASPSA EEEAEAEEEY DSVAGTAGVY SSLDELEVFN PTAILPCFVV  480
VYKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	115	RRCKKKSKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	3e-71	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG089260.3