PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG085510.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 303aa MW: 31121.4 Da PI: 5.8798

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG085510.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	22	67	3	45
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT e ++ + +a + + W++Ia + g+t+++++ ++ TRIDC2BG085510.3 22 GWTREQEKAFENALATVDEEegeaMWDKIADAVE-GKTPEEVRRHYE 67 6***************99**********.********95 PP
2	Myb_DNA-binding	39.8	1.1e-12	138	182	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky TRIDC2BG085510.3 138 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 182 6***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MAAEEASSSG GGGGEEGSGA GGWTREQEKA FENALATVDE EEGEAMWDKI ADAVEGKTPE 60 EVRRHYELLV EDVDGIEAGR VPLLVYAGDG EEGGSGAGAG GSGGGGGGGG KKSGGGGGGH 120 GEKGSSKSAE QERRKGIAWT EDEHRLFLLG LEKYGKGDWR SISRNFVISR TPTQVASHAQ 180 KYFIRLNSMN RERRRSSIHD ITSVNGEASA AQGPITGTNG QAAVPGKSPK QSPHQPGNLP 240 PGVDAFGTTI GQPVGGPLVS AVGTPVTLPV AAPPHMGYAM HAPVPGTVVP RAPMYLMPPP 300 PSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	117	GGGGKKSGGGG
2	108	118	GGGGKKSGGGG
3	109	119	GGGGKKSGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-82	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG085510.3