PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG029070.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 829aa MW: 89764.7 Da PI: 5.1196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG029070.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H TRIDC2BG029070.6 74 FVCEVCGKGFQRDQNLQLHRRGH 96 89******************988 PP
2	zf-C2H2	15.5	5e-05	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H +t+ TRIDC2BG029070.6 153 ACPRCGKRYAVQADLKAHAKTC 174 6******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence
GADKGQLEVC ELSGAAAAAP DRPGMPPNPT EPEQPEAAAT PAPPKKKRNL PGTPDPDAEV 60 IALSPGTLMA TNRFVCEVCG KGFQRDQNLQ LHRRGHNLPW RLRQRGPGAA PPRRRVYVCP 120 EPGCVHHSPA RALGDLTGIK KHFCRKHGEK RWACPRCGKR YAVQADLKAH AKTCGTREYR 180 CDCGTLFTRR DSFVTHRAFC GALVEETGRV LAVPAPPSPR PPDLEEVEEN VDKDKEKEEE 240 NVDKHKEKED EEDKGGEDEN ETSAVAEVDE PQNVEAAMEE PQQQRIPPSP SPTPTSPTPQ 300 EQQPMVAVVP NLDEPVVVVE PIVDIKQEEE DKRDEDVCFQ EADKYDGAEL EDSNLPDNDT 360 PMPPCFLPSP SDAIGTDGSS TSCGTVSSAS NSIAPATTTS TFAGLFASAT TSTTPQSRSL 420 RDLIGVDPTF LCLAIGTPSS LFPQTDASNP GTFAPPPAPH ISATALLQKA AEAGASQAGT 480 SFLKEFGLAS SSSSTPSRPP QGRFIESSSM QSQQPQGRFI ESSSTQSRLP QDRFIDSSST 540 QSQQSRLPQD RFVESRSTQS RLLQDRFIES SSTQSRLPQD RFIESSSTQF RLPQDRYINN 600 SMPSKLSQGR FMDTSLPSQQ LLPQGRFFDN SPASNLSQGR FFDNSQPSNP PQGRFFINSP 660 SSNLPHGRFT DYSSPGRLPQ GMYIDGLPQS RLPQGRYMDN SPPAKLPPQG GRFVDSNQQQ 720 WHQRSNNHNQ LMDMEPGPMV SGSLGLGLAY EGSNPRLPDL MMGQSPLLGP KPATLDFLGL 780 GIGGTMGGST ASGGLPALMV GGELDMGSAA QPPSPWEEAQ RKTNGRTIL

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence

GADKGQLEVC ELSGAAAAAP DRPGMPPNPT EPEQPEAAAT PAPPKKKRNL PGTPDPDAEV  60
IALSPGTLMA TNRFVCEVCG KGFQRDQNLQ LHRRGHNLPW RLRQRGPGAA PPRRRVYVCP  120
EPGCVHHSPA RALGDLTGIK KHFCRKHGEK RWACPRCGKR YAVQADLKAH AKTCGTREYR  180
CDCGTLFTRR DSFVTHRAFC GALVEETGRV LAVPAPPSPR PPDLEEVEEN VDKDKEKEEE  240
NVDKHKEKED EEDKGGEDEN ETSAVAEVDE PQNVEAAMEE PQQQRIPPSP SPTPTSPTPQ  300
EQQPMVAVVP NLDEPVVVVE PIVDIKQEEE DKRDEDVCFQ EADKYDGAEL EDSNLPDNDT  360
PMPPCFLPSP SDAIGTDGSS TSCGTVSSAS NSIAPATTTS TFAGLFASAT TSTTPQSRSL  420
RDLIGVDPTF LCLAIGTPSS LFPQTDASNP GTFAPPPAPH ISATALLQKA AEAGASQAGT  480
SFLKEFGLAS SSSSTPSRPP QGRFIESSSM QSQQPQGRFI ESSSTQSRLP QDRFIDSSST  540
QSQQSRLPQD RFVESRSTQS RLLQDRFIES SSTQSRLPQD RFIESSSTQF RLPQDRYINN  600
SMPSKLSQGR FMDTSLPSQQ LLPQGRFFDN SPASNLSQGR FFDNSQPSNP PQGRFFINSP  660
SSNLPHGRFT DYSSPGRLPQ GMYIDGLPQS RLPQGRYMDN SPPAKLPPQG GRFVDSNQQQ  720
WHQRSNNHNQ LMDMEPGPMV SGSLGLGLAY EGSNPRLPDL MMGQSPLLGP KPATLDFLGL  780
GIGGTMGGST ASGGLPALMV GGELDMGSAA QPPSPWEEAQ RKTNGRTIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-91	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG029070.6