PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG029070.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 645aa MW: 69015 Da PI: 4.8848

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG029070.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H TRIDC2BG029070.5 57 FVCEVCGKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	15.9	3.8e-05	136	157	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H +t+ TRIDC2BG029070.5 136 ACPRCGKRYAVQADLKAHAKTC 157 6******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
AAPDRPGMPP NPTEPEQPEA AATPAPPKKK RNLPGTPDPD AEVIALSPGT LMATNRFVCE 60 VCGKGFQRDQ NLQLHRRGHN LPWRLRQRGP GAAPPRRRVY VCPEPGCVHH SPARALGDLT 120 GIKKHFCRKH GEKRWACPRC GKRYAVQADL KAHAKTCGTR EYRCDCGTLF TRRDSFVTHR 180 AFCGALVEET GRVLAVPAPP SPRPPDLEEV EENVDKDKEK EEENVDKHKE KEDEEDKGGE 240 DENETSAVAE VDEPQNVEAA MEEPQQQRIP PSPSPTPTSP TPQEQQPMVA VVPNLDEPVV 300 VVEPIVDIKQ EEEDKRDEDV CFQEADKYDG AELEDSNLPD NDTPMPPCFL PSPSDAIGTD 360 GSSTSCGTVS SASNSIAPAT TTSTFAGLFA SATTSTTPQS RSLRDLIGVD PTFLCLAIGT 420 PSSLFPQTDA SNPGTFAPPP APHISATALL QKAAEAGASQ AGTSFLKEFG LASSSSSTPS 480 RPPQGRFIES SSMQSQQPQG SGLPQSRLPQ GRYMDNSPPA KLPPQGGRFV DSNQQQWHQR 540 SNNHNQLMDM EPGPMVSGSL GLGLAYEGSN PRLPDLMMGQ SPLLGPKPAT LDFLGLGIGG 600 TMGGSTASGG LPALMVGGEL DMGSAAQPPS PWEEAQRKTN GRTIL

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

AAPDRPGMPP NPTEPEQPEA AATPAPPKKK RNLPGTPDPD AEVIALSPGT LMATNRFVCE  60
VCGKGFQRDQ NLQLHRRGHN LPWRLRQRGP GAAPPRRRVY VCPEPGCVHH SPARALGDLT  120
GIKKHFCRKH GEKRWACPRC GKRYAVQADL KAHAKTCGTR EYRCDCGTLF TRRDSFVTHR  180
AFCGALVEET GRVLAVPAPP SPRPPDLEEV EENVDKDKEK EEENVDKHKE KEDEEDKGGE  240
DENETSAVAE VDEPQNVEAA MEEPQQQRIP PSPSPTPTSP TPQEQQPMVA VVPNLDEPVV  300
VVEPIVDIKQ EEEDKRDEDV CFQEADKYDG AELEDSNLPD NDTPMPPCFL PSPSDAIGTD  360
GSSTSCGTVS SASNSIAPAT TTSTFAGLFA SATTSTTPQS RSLRDLIGVD PTFLCLAIGT  420
PSSLFPQTDA SNPGTFAPPP APHISATALL QKAAEAGASQ AGTSFLKEFG LASSSSSTPS  480
RPPQGRFIES SSMQSQQPQG SGLPQSRLPQ GRYMDNSPPA KLPPQGGRFV DSNQQQWHQR  540
SNNHNQLMDM EPGPMVSGSL GLGLAYEGSN PRLPDLMMGQ SPLLGPKPAT LDFLGLGIGG  600
TMGGSTASGG LPALMVGGEL DMGSAAQPPS PWEEAQRKTN GRTIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-92	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG029070.5