PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG028040.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 469aa    MW: 50800 Da    PI: 5.712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG028040.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.42.2e-92764662373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsPi 90 
                       ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL ar +r   ++ + +a+++  +s   ++++++a++l  f++++P+
  TRIDC2BG028040.2  76 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTPW 168
                       79***************************************************943444555555444444444777777777789******* PP

              GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179
                       ++f++++aN+aIleaveg + vH++D++ ++++Q p+L++ LasR+egpp lR+T+ +   sg       ++ e+g +L +fA++ +v+++f+
  TRIDC2BG028040.2 169 HRFGYMAANHAILEAVEGFSVVHVVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVGCSGpppaLDMSYDELGAKLVNFARSRNVTMDFR 261
                       *******************************************************888766667666788899******************** PP

              GRAS 180 vl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                       ++        ++ +++l++++L  +  Eal+ n+++ lh+++de++ + s       r+ +Lk +++l P++vvv+e++ad ++++ + r+  
  TRIDC2BG028040.2 262 MVptspadaFTSLVDQLRVQQLVSDGTEALILNCHMLLHTVPDETAGSVSltqsvsLRTMLLKSIRTLDPTLVVVAEEDADFTAGDVVGRLRA 354
                       **888666555566777888887777****************9987666655466678899******************************** PP

              GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                       a+++ +  +d++++ lp+ se+r+++E+e +g++++nv+a+eg +r+er+e  ++W +r++ aGF++v+++e+aa +++++l++++  g+ ++
  TRIDC2BG028040.2 355 AFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVDRVERQEDRARWGQRMRGAGFRAVAFGEEAAGEIRTMLNEHA-AGWGMK 445
                       *****************************.********************************************************.889999 PP

              GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                        e++ l+l+Wk++++v++SaW
  TRIDC2BG028040.2 446 REDDDLMLTWKGHNVVFASAW 466
                       ********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    
SIPPTSRPPY MMQFTHAAVT APPLYPNGHH GLGLGLFLDV GAPRARPWPA AGSLFPTLPP  60
SSKISLGNLN SAGCMEQLLV HCANAIEAND ATLTQQILWV LNNIAPADGD SNQRLTAAFL  120
CALVARASRT GACKAVTAAV AAAVESAALH VHRFTAVELA SFVDLTPWHR FGYMAANHAI  180
LEAVEGFSVV HVVDLSTTHC MQIPTLIDML ASRAEGPPIL RLTVADVGCS GPPPALDMSY  240
DELGAKLVNF ARSRNVTMDF RMVPTSPADA FTSLVDQLRV QQLVSDGTEA LILNCHMLLH  300
TVPDETAGSV SLTQSVSLRT MLLKSIRTLD PTLVVVAEED ADFTAGDVVG RLRAAFNFLW  360
IPYDAVDTFL PKGSEQRRWY EAEVGWKVEN VLAQEGVDRV ERQEDRARWG QRMRGAGFRA  420
VAFGEEAAGE IRTMLNEHAA GWGMKREDDD LMLTWKGHNV VFASAWAPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-161GRAS family protein