PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG018560.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 347aa    MW: 38503.8 Da    PI: 8.5296
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG018560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.25.1e-091955541
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                       +s r  t+  Rrn + KK  EL +LC+++++v+++ 
  TRIDC2BG018560.1 19 KDSTRRRTYETRRNYLTKKVGELGILCNTKACVLVYD 55
                      56778889***************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
LTLRTAMVRK KVPLRYIGKD STRRRTYETR RNYLTKKVGE LGILCNTKAC VLVYDEGASE  60
PYVYPSHAEV VEILNRYKAM PNMPQLKKTM SQEKFLTKCL AKLQHQANKL QSEREDRDIR  120
ALLHKAMLGD NLNAEEVASV GCTSGEIHKS LVERIAKTNP QLPVFQSQVP YVTGSVNMGP  180
PPMYQAPPQQ QAGGQPPVFQ PQVPYIVGRA NMGPSSMYQA PLQQQAGGQL PVFQPQAPYI  240
SGSADMGPPP MYQAPPHQQE GWKPPVFQPQ AQYVTGSVDM GPLPMYQALQ QQEGWRNMVR  300
SEGDHSALVY NRNGYSTGGH DGAGTSSSAS FPLDDMMSSL DDMEFEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.13e-16M-type_MADS family protein