PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC2BG018540.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 427aa MW: 48940.6 Da PI: 9.5644

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG018540.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.1	4.1e-10	19	54	22	57
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +yp+ e+ +e A+++gLt +qV++WF+ rR kek+ TRIDC2BG018540.8 19 VQYPKPEDVTEYAASVGLTYNQVRIWFKERRRKEKR 54 79*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
GQRNLPCKSR CWRVFILEVQ YPKPEDVTEY AASVGLTYNQ VRIWFKERRR KEKRHMEAAE 60 VHMETQASAR SNWPRCSSSR SSNSSQSPTQ DTTGHHSYQD QSVLKKRKIM SPTAQRSTLP 120 FENNDPVRKH GKGKGLMTVW HAMYSQTAEI QDCSSFIDES GCLRSLRPFE DCGRKLAQVQ 180 RQTSPQKKVN KKSRPPPSKR KVPCGRVTDL TEHPPVECHL SVDESESSEL RTEQATLVDD 240 EELELSELQA GPNPLRCSAH ISSTGRHGCP LCKDLLARFP PPSVRMKQLF PTKPWESSPE 300 MVKKLFQVVR FVYTHFGSLD VHPFTFDEFA QAFHDKDSSL LGKVHVSLLK LLMLNTERGS 360 GSVFVPRSSK DSRFLSFLNF VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML 420 NRNFFNK

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

GQRNLPCKSR CWRVFILEVQ YPKPEDVTEY AASVGLTYNQ VRIWFKERRR KEKRHMEAAE  60
VHMETQASAR SNWPRCSSSR SSNSSQSPTQ DTTGHHSYQD QSVLKKRKIM SPTAQRSTLP  120
FENNDPVRKH GKGKGLMTVW HAMYSQTAEI QDCSSFIDES GCLRSLRPFE DCGRKLAQVQ  180
RQTSPQKKVN KKSRPPPSKR KVPCGRVTDL TEHPPVECHL SVDESESSEL RTEQATLVDD  240
EELELSELQA GPNPLRCSAH ISSTGRHGCP LCKDLLARFP PPSVRMKQLF PTKPWESSPE  300
MVKKLFQVVR FVYTHFGSLD VHPFTFDEFA QAFHDKDSSL LGKVHVSLLK LLMLNTERGS  360
GSVFVPRSSK DSRFLSFLNF VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML  420
NRNFFNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	RRRKEK
2	105	134	KKRKIMSPTAQRSTLPFENNDPVRKHGKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	3e-54	HB-other family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG018540.8