PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG025720.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 557aa MW: 59099.5 Da PI: 7.7313

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG025720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	279	301	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg TRIDC2AG025720.1 279 VPCPNFRRPGGCPSGDNCEFSHG 301 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
AQAMGDLPDL DRAQAAGAGR RDRLAALLEL AAADDVDGMK AALEGAGEEA AELADDVGLW 60 YGRSKAYEPR TPLMVAATYG SARVVSLLLG RAGWVDVARR PGGDGFTPLH CAASGGSCDA 120 VQVVKMLLDA GADPATADST GRVPADVVRA PPASADALGD LEILLGRRRA LAVATSAASG 180 ASSPPLSSSP DDEGNRSPSS RSSSLSPITV DRAKKEYPVD PTLPDIKSSV YASDEFRMFA 240 FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKHPYTAVP CPNFRRPGGC PSGDNCEFSH 300 GVFESWLHPT QYRTRLCKEG AACARRICFF AHDEDELRYV PHNSGAGLLS PRATSSIDMT 360 AAAALGLLPG SPRHFVPPPG SPSAVNNGGA ASAHWLQGSR LRSSFNARDA TVEDLGLLLD 420 WESQYLGALC LPPSSRPQPR LSTGLSIRPT AIAPTSLEDM YASQMAMSPR FTNDQGHSAY 480 SPAHKSAILN KLHQQKGLLS PVNTNRMYSP RALDPAALVH SPIGGMSPRS PRLMEPTSPM 540 SARFGAPATI RGFAAEF

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

AQAMGDLPDL DRAQAAGAGR RDRLAALLEL AAADDVDGMK AALEGAGEEA AELADDVGLW  60
YGRSKAYEPR TPLMVAATYG SARVVSLLLG RAGWVDVARR PGGDGFTPLH CAASGGSCDA  120
VQVVKMLLDA GADPATADST GRVPADVVRA PPASADALGD LEILLGRRRA LAVATSAASG  180
ASSPPLSSSP DDEGNRSPSS RSSSLSPITV DRAKKEYPVD PTLPDIKSSV YASDEFRMFA  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKHPYTAVP CPNFRRPGGC PSGDNCEFSH  300
GVFESWLHPT QYRTRLCKEG AACARRICFF AHDEDELRYV PHNSGAGLLS PRATSSIDMT  360
AAAALGLLPG SPRHFVPPPG SPSAVNNGGA ASAHWLQGSR LRSSFNARDA TVEDLGLLLD  420
WESQYLGALC LPPSSRPQPR LSTGLSIRPT AIAPTSLEDM YASQMAMSPR FTNDQGHSAY  480
SPAHKSAILN KLHQQKGLLS PVNTNRMYSP RALDPAALVH SPIGGMSPRS PRLMEPTSPM  540
SARFGAPATI RGFAAEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-125	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG025720.1