PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG062640.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 347aa    MW: 37907.8 Da    PI: 10.2268
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG062640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-132169155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++aa+++++g
  TRIDC1BG062640.1 21 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 69
                      89****9888.8*********......44**********99*************98 PP
2B393.91.2e-29157257190
                       EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+k+ tpsdv+k++rlv+pk++ae+h            +g + +++ l + d  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  TRIDC1BG062640.1 157 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 248
                       89***************************88888777532.34899*********************************************** PP

                       EEE-SSSEE CS
                B3  82 Fkldgrsef 90 
                       F+++ + + 
  TRIDC1BG062640.1 249 FYRSASGNN 257
                       **7654444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MDAPEPGAEA DSGRVGKLPS SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY  60
DAAAQRFRGR DAVTNFRPLA ESDPEDAAEL RFLAARSKAE VVDMLRKHTY PDELAQYKRA  120
YFVAAAASSP TSSSLPPASS PSSASAPSPA ARREHLFDKT VTPSDVGKLN RLVIPKQHAE  180
KHFPLQLPSA GAAVSGECKG MLLNFDDAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG  240
LHAGDAVGFY RSASGNNQLF IECKLRSKTK TTTTTTLTKA TAATPSPAPV VRTVRLFGVD  300
LLTAPAPRHA PEHENYGMTK RSRDADVAAP TPVHAVWKKR CMDFALT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-93RAV family protein