PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG062620.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 316aa    MW: 34072.4 Da    PI: 10.16
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG062620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.5e-1365113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++aa+++++g
  TRIDC1BG062620.1  65 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 113
                       89****9888.8*********......44**********99*************98 PP
2B391.37.1e-29180284194
                       EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                       f+k+ tpsdv+k++rlv+pk++ae+h                   +++ l + d  g+ W+++++y+++s++yvltkGW++Fvk++gL +gD 
  TRIDC1BG062620.1 180 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsasavvP---GecKGMLLNFDDAVGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 269
                       89***************************8877776652...144899********************************************* PP

                       EEEEE-SSSEE..EE CS
                B3  80 vvFkldgrsefelvv 94 
                       v F+++ + + +l+v
  TRIDC1BG062620.1 270 VGFYRSASGNNQLFV 284
                       ****87655555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MDSARSCLVD DVSSGASTGK KASPAPAAPA TMPLQRVGSG ASAVMDAPEP GAEADSARGG  60
RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA ARAYDAAAQR FRGRDAVTNF  120
RPLAESDPGD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ YKRAPSAAAP SAAARREHLF  180
DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSASAVVPGE CKGMLLNFDD AVGKMWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN QLFVDCKIRS NSTTTTTTTF  300
LNAVAAPSPA PVTRTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-100RAV family protein