PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG062600.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | RAV | ||||||||
Protein Properties | Length: 363aa MW: 38994 Da PI: 9.9295 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3.1e-13 | 61 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1BG062600.2 61 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 109 89****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 95.2 | 4.5e-30 | 180 | 280 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL +gD TRIDC1BG062600.2 180 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaagaavP---GecKGVLLNFDDAAGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 269 89***************************8888776652...144889********************************************* PP EEEEE-SSSEE CS B3 80 vvFkldgrsef 90 vvF+++ + + TRIDC1BG062600.2 270 VVFYRSASGNN 280 ****7654444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence |
RSCLVDDVSS GSSTGNKASP VPAAPATKPL QRVGSGASAV MDAPEPGAEA DSGRGGRLPS 60 SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR DAVTNFRPLA 120 ESDPDDAAEL RFLAALSKAE VVDMLRKHTY PDELAQSLPP ASSPSSPAAP SPAARREHLF 180 DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PAAGAAVPGE CKGVLLNFDD AAGKLWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV VFYRSASGNN QLFIDCKLRS KTTTTTTAFV 300 NVAAAAPSPA PVTRTVRLFG VDLLTAPAPE HEEYGMAKTN KRSMDASVEA PTPAHAVWKK 360 RCV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-101 | RAV family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG062600.2 |