PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG062600.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 375aa MW: 40085.9 Da PI: 8.6213

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG062600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.2e-13	68	116	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1BG062600.1 68 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 116 89**9888.8*****......44******99***********98 PP
2	B3	95.1	4.8e-30	187	287	1	90
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL +gD TRIDC1BG062600.1 187 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaagaavP---GecKGVLLNFDDAAGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDA 276 89*************************8888776652...144889***************************************** PP EEEEE-SSSEE CS B3 80 vvFkldgrsef 90 vvF+++ + + TRIDC1BG062600.1 277 VVFYRSASGNN 287 **7654444 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
ALASAALLPT SSISTDSGSS TGNKASPVPA APATKPLQRV GSGASAVMDA PEPGAEADSG 60 RGGRLPSSKY KGVVPQPNGR WGAQIYERHQ RVWLGTFTGE AEAARAYDAA AQRFRGRDAV 120 TNFRPLAESD PDDAAELRFL AALSKAEVVD MLRKHTYPDE LAQSLPPASS PSSPAAPSPA 180 ARREHLFDKT VTPSDVGKLN RLVIPKQHAE KHFPLQLPAA GAAVPGECKG VLLNFDDAAG 240 KLWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDAVVFY RSASGNNQLF IDCKLRSKTT 300 TTTTAFVNVA AAAPSPAPVT RTVRLFGVDL LTAPAPEHEE DLSLEEKRGE EGKSTLEVLV 360 GNSSHSIHSP EEFPY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

ALASAALLPT SSISTDSGSS TGNKASPVPA APATKPLQRV GSGASAVMDA PEPGAEADSG  60
RGGRLPSSKY KGVVPQPNGR WGAQIYERHQ RVWLGTFTGE AEAARAYDAA AQRFRGRDAV  120
TNFRPLAESD PDDAAELRFL AALSKAEVVD MLRKHTYPDE LAQSLPPASS PSSPAAPSPA  180
ARREHLFDKT VTPSDVGKLN RLVIPKQHAE KHFPLQLPAA GAAVPGECKG VLLNFDDAAG  240
KLWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDAVVFY RSASGNNQLF IDCKLRSKTT  300
TTTTAFVNVA AAAPSPAPVT RTVRLFGVDL LTAPAPEHEE DLSLEEKRGE EGKSTLEVLV  360
GNSSHSIHSP EEFPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-100	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG062600.1