PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1054aa MW: 116002 Da PI: 4.3216

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31	4.4e-10	406	446	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 e+L+++F ++yps++ +e LA++lgLt qV WF R TRIDC1BG056900.3 406 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 446 589**********************************8766 PP
2	Homeobox	34.7	2.9e-11	883	923	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++L e F+ ++yps++ +e LA++lgLt rqV WF rR TRIDC1BG056900.3 883 QRLHEQFKTDQYPSRAVKESLAQELGLTFRQVEKWFESRRR 923 6899***********************************96 PP
3	PHD	39.5	1.3e-13	58	113	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1BG056900.3 58 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 113 599999854555******66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence
SLEKIRPEKE LERAKEEIVR CKLRIREAFQ NLDHLLTVGK LEESLFDSEG KISSDDIVCA 60 TCSLQEATLN NDIILCDGAC DRGFHQNCLN PPLLTKDIPE GEEGWLCPAC DCKIDCIELI 120 NELQGTDLDI NDSWEKVFPE AAAVAHGPMQ NDVADLPSDD SEDDDFDPNI SEEHVAGHAE 180 GSSEEDGDEG SDSDDSNFMT SSDNSEHVKE KVKVDDLGLP SEDSEDDDYD PAGPDSDKDI 240 EEKQDESDFT SDSDEFCAEI TKSCSKDEVS SGPKVGGRTN DLEGAPVRPN TSMSHSKDLE 300 IDPDVILPST KRQVQRLDYK KLYDDTYGEA PSESSDGDEW SGKSTLKEDN EERNEVDSFA 360 RKSSRGTRAV HPDGFHGLVN DQHAGGLTSA GSNSKANKRH FGPVINERLN QYFTTDQYPS 420 RAVKESLAQE LGLTFHQVNK WFESTRHARA AAMKNGTQLE KQSNSRKKKS SDATHMEVKD 480 QPNACKEEGI RQHSPVKQDT DGGQRTHVPP ESSQSYTKTS GLIGCPKSES RENHEKNTSS 540 KYVGMPTDGS AEDQILELEP EDEGSDSDDL NFVTRSGNSE PLKNREKIDD LGLPSAYSED 600 DDYDSDEVIE MMQSSSDESN FTTSSDNPED VKEKVDDLGL PSEDSEDDDY DPAGPGSDED 660 IGKKQSSSEK SHSSDKSENR KTKRKVDDLG LPSEDSEDDD YDPASPDSDK DIEEKQDESD 720 FSSDSDDFCV EIAKSCCGQE GVPSGAKVGA DRTDDLEGTT ICANAAISNL PSKDPEMDQY 780 VVLPVSARQK VQSPDSKKLA AYGRAPSDSS YSEELSKKGT PEKDKGKESE AGSFVRQSNE 840 FTPQRSQQSF HGSVNGQNAE ELLTPNGSST TGQKRQYGPI INQRLHEQFK TDQYPSRAVK 900 ESLAQELGLT FRQVEKWFES RRRHIRVASN KGSTHVENHS TKENPNECKS DALNEDTPSG 960 ILNEGITQDG PLKQDIGGGL KTNASTPNSS QRYTTPLVRR PKGESRENHM KNTSSSSSGR 1020 PEGSDAGYAV LALEALDEKI RSKMLQELKK RKIG

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence

SLEKIRPEKE LERAKEEIVR CKLRIREAFQ NLDHLLTVGK LEESLFDSEG KISSDDIVCA  60
TCSLQEATLN NDIILCDGAC DRGFHQNCLN PPLLTKDIPE GEEGWLCPAC DCKIDCIELI  120
NELQGTDLDI NDSWEKVFPE AAAVAHGPMQ NDVADLPSDD SEDDDFDPNI SEEHVAGHAE  180
GSSEEDGDEG SDSDDSNFMT SSDNSEHVKE KVKVDDLGLP SEDSEDDDYD PAGPDSDKDI  240
EEKQDESDFT SDSDEFCAEI TKSCSKDEVS SGPKVGGRTN DLEGAPVRPN TSMSHSKDLE  300
IDPDVILPST KRQVQRLDYK KLYDDTYGEA PSESSDGDEW SGKSTLKEDN EERNEVDSFA  360
RKSSRGTRAV HPDGFHGLVN DQHAGGLTSA GSNSKANKRH FGPVINERLN QYFTTDQYPS  420
RAVKESLAQE LGLTFHQVNK WFESTRHARA AAMKNGTQLE KQSNSRKKKS SDATHMEVKD  480
QPNACKEEGI RQHSPVKQDT DGGQRTHVPP ESSQSYTKTS GLIGCPKSES RENHEKNTSS  540
KYVGMPTDGS AEDQILELEP EDEGSDSDDL NFVTRSGNSE PLKNREKIDD LGLPSAYSED  600
DDYDSDEVIE MMQSSSDESN FTTSSDNPED VKEKVDDLGL PSEDSEDDDY DPAGPGSDED  660
IGKKQSSSEK SHSSDKSENR KTKRKVDDLG LPSEDSEDDD YDPASPDSDK DIEEKQDESD  720
FSSDSDDFCV EIAKSCCGQE GVPSGAKVGA DRTDDLEGTT ICANAAISNL PSKDPEMDQY  780
VVLPVSARQK VQSPDSKKLA AYGRAPSDSS YSEELSKKGT PEKDKGKESE AGSFVRQSNE  840
FTPQRSQQSF HGSVNGQNAE ELLTPNGSST TGQKRQYGPI INQRLHEQFK TDQYPSRAVK  900
ESLAQELGLT FRQVEKWFES RRRHIRVASN KGSTHVENHS TKENPNECKS DALNEDTPSG  960
ILNEGITQDG PLKQDIGGGL KTNASTPNSS QRYTTPLVRR PKGESRENHM KNTSSSSSGR  1020
PEGSDAGYAV LALEALDEKI RSKMLQELKK RKIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-58	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.3