PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 939aa MW: 103484 Da PI: 4.1848

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.2	3.8e-10	405	445	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 e+L+++F ++yps++ +e LA++lgLt qV WF R TRIDC1BG056900.11 405 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 445 589**********************************8766 PP
2	Homeobox	21.1	5.3e-07	882	914	13	45
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVk 45 ++L e F+ ++yps++ +e LA++lgLt rqV TRIDC1BG056900.11 882 QRLHEQFKTDQYPSRAVKESLAQELGLTFRQVC 914 6899***************************95 PP
3	PHD	39.7	1.1e-13	57	112	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1BG056900.11 57 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 112 599999854555******66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence
LEKIRPEKEL ERAKEEIVRC KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT 60 CSLQEATLNN DIILCDGACD RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN 120 ELQGTDLDIN DSWEKVFPEA AAVAHGPMQN DVADLPSDDS EDDDFDPNIS EEHVAGHAEG 180 SSEEDGDEGS DSDDSNFMTS SDNSEHVKEK VKVDDLGLPS EDSEDDDYDP AGPDSDKDIE 240 EKQDESDFTS DSDEFCAEIT KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHSKDLEI 300 DPDVILPSTK RQVQRLDYKK LYDDTYGEAP SESSDGDEWS GKSTLKEDNE ERNEVDSFAR 360 KSSRGTRAVH PDGFHGLVND QHAGGLTSAG SNSKANKRHF GPVINERLNQ YFTTDQYPSR 420 AVKESLAQEL GLTFHQVNKW FESTRHARAA AMKNGTQLEK QSNSRKKKSS DATHMEVKDQ 480 PNACKEEGIR QHSPVKQDTD GGQRTHVPPE SSQSYTKTSG LIGCPKSESR ENHEKNTSSK 540 YVGMPTDGSA EDQILELEPE DEGSDSDDLN FVTRSGNSEP LKNREKIDDL GLPSAYSEDD 600 DYDSDEVIEM MQSSSDESNF TTSSDNPEDV KEKVDDLGLP SEDSEDDDYD PAGPGSDEDI 660 GKKQSSSEKS HSSDKSENRK TKRKVDDLGL PSEDSEDDDY DPASPDSDKD IEEKQDESDF 720 SSDSDDFCVE IAKSCCGQEG VPSGAKVGAD RTDDLEGTTI CANAAISNLP SKDPEMDQYV 780 VLPVSARQKV QSPDSKKLAA YGRAPSDSSY SEELSKKGTP EKDKGKESEA GSFVRQSNEF 840 TPQRSQQSFH GSVNGQNAEE LLTPNGSSTT GQKRQYGPII NQRLHEQFKT DQYPSRAVKE 900 SLAQELGLTF RQVCTSFFHE FPCMYSCLGI EQNPHYGLC

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence

LEKIRPEKEL ERAKEEIVRC KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT  60
CSLQEATLNN DIILCDGACD RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN  120
ELQGTDLDIN DSWEKVFPEA AAVAHGPMQN DVADLPSDDS EDDDFDPNIS EEHVAGHAEG  180
SSEEDGDEGS DSDDSNFMTS SDNSEHVKEK VKVDDLGLPS EDSEDDDYDP AGPDSDKDIE  240
EKQDESDFTS DSDEFCAEIT KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHSKDLEI  300
DPDVILPSTK RQVQRLDYKK LYDDTYGEAP SESSDGDEWS GKSTLKEDNE ERNEVDSFAR  360
KSSRGTRAVH PDGFHGLVND QHAGGLTSAG SNSKANKRHF GPVINERLNQ YFTTDQYPSR  420
AVKESLAQEL GLTFHQVNKW FESTRHARAA AMKNGTQLEK QSNSRKKKSS DATHMEVKDQ  480
PNACKEEGIR QHSPVKQDTD GGQRTHVPPE SSQSYTKTSG LIGCPKSESR ENHEKNTSSK  540
YVGMPTDGSA EDQILELEPE DEGSDSDDLN FVTRSGNSEP LKNREKIDDL GLPSAYSEDD  600
DYDSDEVIEM MQSSSDESNF TTSSDNPEDV KEKVDDLGLP SEDSEDDDYD PAGPGSDEDI  660
GKKQSSSEKS HSSDKSENRK TKRKVDDLGL PSEDSEDDDY DPASPDSDKD IEEKQDESDF  720
SSDSDDFCVE IAKSCCGQEG VPSGAKVGAD RTDDLEGTTI CANAAISNLP SKDPEMDQYV  780
VLPVSARQKV QSPDSKKLAA YGRAPSDSSY SEELSKKGTP EKDKGKESEA GSFVRQSNEF  840
TPQRSQQSFH GSVNGQNAEE LLTPNGSSTT GQKRQYGPII NQRLHEQFKT DQYPSRAVKE  900
SLAQELGLTF RQVCTSFFHE FPCMYSCLGI EQNPHYGLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-57	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.11