PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG056140.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 168aa MW: 18748.3 Da PI: 11.5784 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.6 | 2.7e-31 | 53 | 148 | 3 | 95 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++++++ + + a++++++ TRIDC1BG056140.2 53 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAQHEIDKLPPLQFPPHDDDlllS-------AHHHHHHlqpt 138 78******************************************************************4333442.......33333332222 PP TCP 89 ...kaaksaa 95 +++ a+ TRIDC1BG056140.2 139 ssmTSMAMAP 148 2112222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
RLEMISAGDH GNDRRKFEPA AAGNKALQAA AAASRHWSAS TESRIVRVSR VFGGKDRHSK 60 VRTVKGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAQHEID KLPPLQFPPH 120 DDDLLLSAHH HHHHLQPTSS MTSMAMAPPF SRQRRPTTEA AILRGSRA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-42 | TCP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG056140.2 |