PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG048240.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 558aa MW: 62004.6 Da PI: 6.924

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG048240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	21	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk++a+ ++ Rt+ qc +rwqk+l TRIDC1BG048240.1 21 KGGWTPEEDETLREAVTVFKGKNWKRVAEFFP-DRTEVQCLHRWQKVL 67 688***************************.**********986 PP
2	Myb_DNA-binding	56.8	5.2e-18	73	119	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +++ vk++G+ W+ Iar + gR +kqc++rw+++l TRIDC1BG048240.1 73 KGPWTQEEDETIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 119 79****************************.***********97 PP
3	Myb_DNA-binding	60.7	3.1e-19	125	167	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1BG048240.1 125 KEAWTLEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 167 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
PSPADSGSTR RRTSGPVRRA KGGWTPEEDE TLREAVTVFK GKNWKRVAEF FPDRTEVQCL 60 HRWQKVLDPE LIKGPWTQEE DETIIQKVKE HGPTKWSVIA RSLHGRIGKQ CRERWHNHLD 120 PQIRKEAWTL EEEQVLVDAH RMHGNKWAEI AKLLPGRTDN SIKNHWNSSV RKRLDEYDTG 180 AALPVPVHVS HNDLKQVTMA PPAENYIDLN KEPNISLSSV IVDHSDPTHS PRVCSLKNIK 240 GCSDFLSLSL PTAQPVTSCQ ASVADDSAVA LAIMGMKMNS GRDKDMELNF VCQKGLQINL 300 PNEKGLEINS VTAKPDGEID NTGRESTLVK EAQSFGSLCY QIPKLEDIDL VRSPVLSRHH 360 GSEHGVDGFQ SPTGYATPSP TDGIQSDQLS VESILKSAAE NFPGTPSILR RRKRDKPTPS 420 QDTDFKIDAN SDGFDTPKAN CTTYSPHSFK TASFLSLGRL DDQQLPSVLG KFDVSPTYRL 480 RSKRMAVLKT VEKHLDFSAD VMDTCDMVGS LKSSCRNTES VNASSDISSA QDRRINGHMI 540 GLETLTSDFA HTTQLDAT

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

PSPADSGSTR RRTSGPVRRA KGGWTPEEDE TLREAVTVFK GKNWKRVAEF FPDRTEVQCL  60
HRWQKVLDPE LIKGPWTQEE DETIIQKVKE HGPTKWSVIA RSLHGRIGKQ CRERWHNHLD  120
PQIRKEAWTL EEEQVLVDAH RMHGNKWAEI AKLLPGRTDN SIKNHWNSSV RKRLDEYDTG  180
AALPVPVHVS HNDLKQVTMA PPAENYIDLN KEPNISLSSV IVDHSDPTHS PRVCSLKNIK  240
GCSDFLSLSL PTAQPVTSCQ ASVADDSAVA LAIMGMKMNS GRDKDMELNF VCQKGLQINL  300
PNEKGLEINS VTAKPDGEID NTGRESTLVK EAQSFGSLCY QIPKLEDIDL VRSPVLSRHH  360
GSEHGVDGFQ SPTGYATPSP TDGIQSDQLS VESILKSAAE NFPGTPSILR RRKRDKPTPS  420
QDTDFKIDAN SDGFDTPKAN CTTYSPHSFK TASFLSLGRL DDQQLPSVLG KFDVSPTYRL  480
RSKRMAVLKT VEKHLDFSAD VMDTCDMVGS LKSSCRNTES VNASSDISSA QDRRINGHMI  540
GLETLTSDFA HTTQLDAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	416	RRRKRDK
2	410	417	RRRKRDKP
3	411	417	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-99	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG048240.1