PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG047480.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 109aa MW: 11208 Da PI: 7.7974 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 25.6 | 2e-08 | 1 | 17 | 9 | 25 |
zf-LSD1 9 sYPrGApsVRCalCdtV 25 +YP+GA+sV+Ca+C tV TRIDC1BG047480.17 1 MYPAGATSVCCAVCSTV 17 9**************99 PP | |||||||
2 | zf-LSD1 | 47.5 | 3e-15 | 32 | 56 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1BG047480.17 32 CGGCHTLLMYIRGATSVQCSCCHTV 56 ************************9 PP | |||||||
3 | zf-LSD1 | 39 | 1.3e-12 | 70 | 94 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V TRIDC1BG047480.17 70 CGSCRMLLMYQYGARSVKCAVCSFV 94 **********************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence |
MYPAGATSVC CAVCSTVTAV PAPGTEMAQL VCGGCHTLLM YIRGATSVQC SCCHTVNLAM 60 EANQVAHVNC GSCRMLLMYQ YGARSVKCAV CSFVTSVGAS SGAEQKPSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-50 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG047480.17 |