PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG047480.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 133aa MW: 13908.5 Da PI: 8.0342 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.3 | 2.9e-14 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1BG047480.16 8 CSGCRNLLMYPAGATSVCCAVCSTV 32 ***********************99 PP | |||||||
2 | zf-LSD1 | 47 | 4.2e-15 | 47 | 71 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1BG047480.16 47 CGGCHTLLMYIRGATSVQCSCCHTV 71 ************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence |
GAQSQLVCSG CRNLLMYPAG ATSVCCAVCS TVTAVPAPGT EMAQLVCGGC HTLLMYIRGA 60 TSVQCSCCHT VNLAMEGIST KAFISLSLPG LQVVYAAGFD SLFETMLTLI RVCKTLLLSR 120 MYSEVGKALA ISR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-33 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG047480.16 |